Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq345 93.3 6e-14 seq2100 91.5 2e-13 seq48 84.2 3e-11 >seq345 Length=175672 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 181971 AGTTTCTTGGTGGTCACGGCAGGAAAGCCCTTGGACAGGTCGAAACGTATCTGGCGACCA 182030 ||||||||||| |||| ||||||||| ||| ||||| ||||| || |||||| || Sbjct 150496 AGTTTCTTGGTCGTCAGGGCAGGAAAACCCGCCGACAGATCGAATCGCATCTGGTAGCCG 150437 Query 182031 AATACGGACCTTGTGCCAGTTCCGGTACGATCATCGGCATCGACGCCGTTTTCCAGCAC 182089 || ||||| | |||||| || |||||||| || || ||||||||| | || ||||| Sbjct 150436 AAAACGGAACGTGTGCCTGTCCCGGTACGGTCGCCGCGGTCGACGCCGGTATCGAGCAC 150378 >seq2100 Length=19628 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 181463 CAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCTG 181522 ||| ||||| || |||||| ||||| || || || | ||| || || ||| ||||| Sbjct 19620 CAGCAGCGCATAGCTGGCGATATTGAACGGCAGGCCGAGGAACACATCGCAGGAACGCTG 19561 Query 181523 ATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCACGG 181582 || | ||||||| || ||| | | | || ||||||||||| | ||||||||| Sbjct 19560 ATACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGGAAGAAGGCGTGGCACGG 19501 Query 181583 CGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCAT 181630 || || |||||| ||| | | ||||||| ||||| |||||||| || Sbjct 19500 CGCCAGCGCCATTTTATCCAGCTCGCCGACGTTCCATGCCGAGACGAT 19453 >seq48 Length=607718 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 96755 TGCGGGGTAGTAGCAGTGGTTAGCTCGTCTGCCTCATAAGCAGAAGGTCATCAGTTCGAA 96814 |||||||| | |||||| | ||||||||| | ||||||| | ||||||||||||||||| Sbjct 383500 TGCGGGGTGG-AGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATCAGTTCGAG 383558 Query 96815 TCTGATCCCCGCAACC 96830 |||| ||||||| ||| Sbjct 383559 TCTGGTCCCCGCTACC 383574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661120249649160