Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq26023 309 1e-79 seq25528 257 5e-64 seq10590 122 3e-23 seq85 111 5e-20 >seq26023 Length=543 Score = 309 bits (342), Expect = 1e-79 Identities = 398/540 (74%), Gaps = 8/540 (1%) Strand=Plus/Minus Query 39008 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG 39067 ||||||||||||||||||||||| |||||||||||||| | ||| || || | |||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 39068 CTCGGGTAGTCGAACTGCGTGATCGTTACGCC-GTCC-GCAGGCCGCACCCACG-TCGGG 39124 |||||||||||||||||||| || | ||| |||| || || || | | | |||| Sbjct 476 GACGGGTAGTCGAACTGCGTGA-CGATCTGCCCGTCCTGCTCGCGGCGC--ATGATCGGA 420 Query 39125 ATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGC 39184 ||| |||| ||||| ||| ||||||||||| ||||| |||||||||||| ||| Sbjct 419 ATGATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGG 360 Query 39185 CGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTC 39244 || || |||||||| || ||||| |||| | |||| |||||| || || || Sbjct 359 CGCTTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTC 300 Query 39245 TCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATG 39304 ||| ||| | || || ||||| ||| || | ||| | |||||| | | || | ||| Sbjct 299 TCGATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATG 240 Query 39305 CCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCG 39364 || || |||||||| | ||||||||| | ||| ||||||||| || ||| Sbjct 239 CCGTCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCC 180 Query 39365 CCGAC-CTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTT 39423 || | ||||| ||| | | ||||| || | |||||||||| ||| | || ||| Sbjct 179 CCCATGCTGAACGGGAA-GCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTT 121 Query 39424 GATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTA 39483 |||| | |||||||| ||||||| ||||| ||| ||||||||||| |||||||| Sbjct 120 GATCGTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTA 61 Query 39484 CCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGAC 39543 ||| || ||||| ||||| |||||||||||||||| ||| | ||||||||||||||| Sbjct 60 GTCGATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq25528 Length=831 Score = 257 bits (284), Expect = 5e-64 Identities = 446/636 (70%), Gaps = 18/636 (3%) Strand=Plus/Minus Query 39979 CATCTCGGCGGCCGACTTCAGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTG 40038 ||||||||| || | ||| | ||||||||| ||||| |||||| ||| || | | | Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 40039 GTAGAGGGACGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 40098 || | | ||| || | ||| |||||||| || || ||||| || | ||||| | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 516 Query 40099 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCG 40158 ||||||||||||||||||||||| | ||| | | || ||| || ||| || Sbjct 515 ATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGACG 456 Query 40159 GTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAA 40218 | ||| ||| ||||||||||||||| ||| ||||||||||||||||| ||| Sbjct 455 GAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGAA 396 Query 40219 GAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTA 40278 | |||| ||||| ||||| | ||| | ||| || || | ||| || | ||||| Sbjct 395 GTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGTA 336 Query 40279 CTGACCGAGGTTGAGCCGGGTC---ATCACAGCACCACCGGGGCATCCCGTGGTGCCGAT 40335 ||| ||||| || || ||| ||| | || || |||||||| ||||| |||| Sbjct 335 CTGTCCGAGACGCAGGCGCGTCTGGATCTC-GCCTGAC--GGGCATCCGGTGGTCGCGAT 279 Query 40336 CAGGCCCTCTGCGT-GCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGC 40393 ||| || | | | | || | || ||||||| |||||||||||| ||| | || Sbjct 278 CAGTCCTTTGGAATAGGTCTG-CAGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGT 223 Query 40394 AGACCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTC 40453 | |||||| || ||| || ||| |||| |||||||||||||| ||| || || Sbjct 222 A-ACCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC 164 Query 40454 -GTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTG 40512 | | | | |||||||||||||||||| ||||| ||| ||||||| | |||||| Sbjct 163 TGACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTG 105 Query 40513 CTCGGGCGTGCCCCACTGGACCCGCTCCTGGTC---GGAGCGCGAGCCCGGCGCGACGTA 40569 ||||||| ||||||||| || ||| || ||| | | ||| ||| || | ||| || Sbjct 104 ATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACATA 45 Query 40570 CGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGC 40605 ||||||| ||||||||| |||||||| || ||||| Sbjct 44 GGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGC 9 >seq10590 Length=4137 Score = 122 bits (134), Expect = 3e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 2622 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2563 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || || | ||||| || ||||||||| || ||||| || ||||||| || Sbjct 2562 CAGGTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACC 2503 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || || || || ||||| ||| ||| ||||| ||||||| ||| ||| || Sbjct 2502 GGCGCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAA 2443 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39738 || || | |||||||| ||||||||||||||||||||| Sbjct 2442 CTCCATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 >seq85 Length=367292 Score = 111 bits (122), Expect = 5e-20 Identities = 259/386 (67%), Gaps = 26/386 (7%) Strand=Plus/Plus Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630 ||||||| |||||||| || || || || ||||| | || || || || |||| || Sbjct 8430 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 8489 Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA-GCCCGAAGGTCGGGTCCAGG 38689 |||||| || | |||||| |||||||||||||||| |||| | || | | Sbjct 8490 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCC-----TGGGTTTC--- 8541 Query 38690 ATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTC 38749 || | | || | || | || ||| ||||||| || ||||||| | || ||| Sbjct 8542 --CTTGACGAGATGGTCG---ATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATTC 8596 Query 38750 TTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCC 38809 ||||| |||| || || || | | |||||||||||||||||||||||||| Sbjct 8597 TTGCGC---GCGTTGTAGGT---CGGGATGTTTTCCATCGGACCCGGACGGTACAGCGCC 8650 Query 38810 ACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGG---AGCGC 38866 || | ||| ||||||||||| | |||| ||||| || || || ||| | |||| Sbjct 8651 ACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTT---CATGCCGATCAGCGCCTTGCGC 8707 Query 38867 ATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAC 38926 || || | || | ||||||||| || ||| ||||| | | ||||| || || Sbjct 8708 ATGCCGGTACTTTCCACCTGGAACACGCCGACCGTCTCGCCGCGCGACAGCATTTCATAG 8767 Query 38927 GTCGCGGGGTCATCCAGCGGGATGTT 38952 | |||||||||||| | ||| Sbjct 8768 CTGAGCTTGTCATCCAGCGGCAGGTT 8793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160186288253050