Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq3869 188 8e-43 seq4092 161 1e-34 seq2516 150 2e-31 seq2100 118 1e-21 seq2053 87.8 2e-12 seq345 86.0 7e-12 seq272 82.4 9e-11 >seq3869 Length=8584 Score = 188 bits (208), Expect = 8e-43 Identities = 427/638 (67%), Gaps = 18/638 (3%) Strand=Plus/Plus Query 76956 ATATATTTGCGTCCGGTCTGTGCGCGTTCCTGAACAAGCAACTGGAACAAATCTGCTGCT 77015 ||||| |||| ||||| ||||| ||||| | | || | ||||| || | ||| Sbjct 4141 ATATAGATGCGGCCGGTAGAGGCGCGCTCCTGCATCATCAGCGAGAACAGCTCAACGGCT 4200 Query 77016 TTAATGCGTTTCTTGCGTACCGTTGGGTCTTTTTCCAAACTGGTATAGAGTTCTTCGAAC 77075 ||||| || | ||| || | | ||| | || | ||| || || || ||| Sbjct 4201 TTAATACGCTGCTTACGAATGCTGTCGTCCTGCTCGTACTGGGTGTACAGGCGCTCAAAC 4260 Query 77076 TCAGTCTGATCAGCTTGATAGAAAGCATCATACAGGCGATCATTTGCAACGTC---AGGG 77132 || |||||| || || |||| || |||||||||| | ||||| |||| Sbjct 4261 TCGTCCTGATCGGC--GA-AGAAGGCGTCATACAGGCCC------GGGACGTCGGAAGGG 4311 Query 77133 CTGAACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGA 77192 |||||||| || || | || || | | ||| | ||||||| | ||| | ||| Sbjct 4312 CTGAACAGGGTAATATCGCCGCCCTTCAGCAGACGGGTGTACATCAGCTTGTTGATCTGT 4371 Query 77193 ACGCCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACC 77252 || || || |||| |||||||| ||||| || ||| |||||||||||| ||| Sbjct 4372 ACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAGCACC 4431 Query 77253 AGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCACGA 77312 |||||| |||| ||||||| |||||| || || || | | ||||| || || || || Sbjct 4432 AGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCGCCGCCGCGC 4491 Query 77313 ACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACG 77372 ||||| || || || |||||||| ||||| ||||| | ||| || ||||||| || | Sbjct 4492 ACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAGAACGGAATGCAG 4551 Query 77373 CCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCA 77432 || || || | ||||| || || ||||| |||| ||||||||| | || || Sbjct 4552 CCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCGCGAATGCGCCCGGCG 4611 Query 77433 TTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGC---AGAGGTTACAGCA 77489 || | ||||| || ||||| || |||| || ||||| ||||| ||||| || Sbjct 4612 TTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGCTGGAGGT---GGCG 4668 Query 77490 TTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGCGTA 77549 || | ||| |||| || || | || |||| ||||| | |||||||| || Sbjct 4669 TTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGAACTGACGGGTT 4728 Query 77550 GGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 || |||||||| || | ||| || ||||| || | ||| Sbjct 4729 GGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGA 4766 Score = 104 bits (114), Expect = 3e-17 Identities = 332/495 (67%), Gaps = 30/495 (6%) Strand=Plus/Plus Query 74795 GCCAACTAGGTAAGAACTCACTTCAACCTCTTGCGGGGCTACCTGAACGTTGTCAGACTT 74854 ||| || || |||||||| ||||| || || ||||| || |||||||||||||| || Sbjct 1915 GCCGACGAGATAAGAACTGACTTCCACTTCCTGCGGCGCCACCTGAACGTTGTCGGAGAC 1974 Query 74855 CAACCATTTGTTCATCCACGGGTACGGGTTAGGACTCGGTTTA-AACGG-AGACTGTAAC 74912 || ||| |||| ||||| ||| |||||| ||| ||| | ||||| ||| | | Sbjct 1975 CAGCCAGGTGTTGATCCATGGGATCGGGTT-GGAGCGGGTCTGGAACGGCAGATCGAGGC 2033 Query 74913 CCAACCGCTCGCATACGTTGGTCGGTTAAGTGTTCGATGTA--GGC-GATTGTACTTTTC 74969 ||| |||| |||| || | ||| | || |||| ||| ||| || || ||| Sbjct 2034 CCA-CCGCCTGCATGCGGATATTGGTGATGTACTCGACGTACTGGCAGAGAATATCTTTA 2092 Query 74970 AGTGTCACGCCGTCAACATCA--CCGATGCTGAATAAGTGTTCAGCCCATTCTTTTTCCT 75027 ||| |||| | |||| ||| || ||| | || || ||||| ||||| |||| Sbjct 2093 T---TCAGGCCG--ATCATCGAGCCGTCGCGGAACAGGTAGTCCGCCCACTCTTTCTCCT 2147 Query 75028 GCT-CGTAAACTTCGAGGAAAA--TCTTTGTTGCTTCTTCTTCGTACTGATACGCGATTT 75084 ||| || | | | ||| | || | | || || ||| | ||| | ||||||| Sbjct 2148 GCTGCGCCGCCAGC-ACGAACAGGTCATAGCA-CTCCTGCTT-GCACTCTTCGGCGATTT 2204 Query 75085 CTGCCATTTCTGGGTCATCTTTACCCATCTGC--CAGAGTCGGATCTTGCTTTGAGTACC 75142 | |||||||| || || || | || || ||| || | |||| | || || Sbjct 2205 CCGCCATTTCCGGATCGTCGCTGCCGGAGCGCAGCAGGTTCAGCATATGCT--GGGTGCC 2262 Query 75143 TTTCTGATGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTACCTTCCAT 75202 || | || || |||||||| ||||| ||||| || || || || ||||| |||||||| Sbjct 2263 GGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTTGGCGTTGCCTTCCAT 2322 Query 75203 C---TTGCCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAACGGATCGC 75259 | |||| ||||||||||| ||| | ||| || ||| ||||| |||||||| Sbjct 2323 CAGTTTGC---GTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTAGAAGCGGATCGC 2379 Query 75260 TTCCAGAGCGTTGAC 75274 |||||| || || || Sbjct 2380 TTCCAGGGCATTAAC 2394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 288/438 (66%), Gaps = 24/438 (5%) Strand=Plus/Plus Query 75996 GCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAAGC 76055 || || || |||||||||||||| ||||| ||||| |||||| | | | || | ||| Sbjct 3169 GCGCCATCACGGGTGTTGTGATAGTACAGCGTTTTGACGCCGAATTTATAGGCGTTGAGC 3228 Query 76056 AGGTCAT----CAA-TGATGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGAT 76110 ||||| | ||| || || | | | |||||| || |||||| | ||||| Sbjct 3229 AGGTCTTTGAGCAACTGCTGCAT-CGG----CACTTTTCCGGACGGGAAGCGCGTCGGAT 3283 Query 76111 CATAGTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAG 76170 | ||||| ||||| |||||||||| || || | |||||||||||| | | | || | Sbjct 3284 CGTAGTTAGTGTTGGCAGAGATCGACTGGTCGATAAACTTCTGCATGATACCCACCAGCT 3343 Query 76171 ACAGATAACCTTTATTACCGCGTTTTGCCATTGTCCAGAGATAATCATAGAAATCAATCT 76230 ||||||||| | || || | ||| ||| || || ||| | ||| Sbjct 3344 GCAGATAACCGT------CGTTGTTCGGCATCTCCCACAGCAGCTCGTAG---GCGTTCT 3394 Query 76231 GGTCGTTCTGG---TTCGGTACTACCTGGTTGAATGA-ACCTTCTTTCGAAGATTTCACA 76286 | ||| | | | ||| || |||||| | | || ||| || || || | ||| | | Sbjct 3395 GCAGGTTTTCGTAATCCGGCACCACCTGG-CGCAGGATACCGTCCTTGGACGCTTTGATA 3453 Query 76287 CTCACAGGGCCGCGAGGCGGTTCAATCCCGTTTGTTGAGTTGCTTACTTGAGAACTACTC 76346 ||||| ||||||| ||||| ||||| ||||| || | |||| | || || || Sbjct 3454 CTCACGTGGCCGCGCGGCGGCTCAATGCCGTTGGTGGCGTTGGAGATCTGCGACGAGGTC 3513 Query 76347 TCACATGGCATTAAAGCAGAAAGAGTTGAGTTACGCAAGCCATATTTTTTGATTTCGCCG 76406 || | ||||| | || || || |||||||| |||| ||| | |||| || || Sbjct 3514 TCGGACGGCATCAGTGCGGAGAGCGTTGAGTTGCGCAGGCCGTGAGTTTTAATGGACTCG 3573 Query 76407 CGCAACCATTCCCAATCG 76424 ||||| |||||| ||| Sbjct 3574 CGCAATGCTTCCCAGTCG 3591 >seq4092 Length=20610 Score = 161 bits (178), Expect = 1e-34 Identities = 506/768 (66%), Gaps = 28/768 (4%) Strand=Plus/Plus Query 141621 GATATCTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTT 141680 |||||| |||||||| || || ||||| ||||| |||| ||||||||||| ||||| Sbjct 17062 GATATCCGGGTACATGCGCTTGCTGGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTT 17121 Query 141681 ACGATCCCCAGGATTCATGTTT-ACACCTTTTTCCATAAACATGACCAGTTTAGGGAACA 141739 | || || | | | ||| || | || | || | |||||||| ||||||| Sbjct 17122 CGGGTCGCC-GAACTTATGGTTCAGGCCGTCGCGGATCGCGAACACCAGTTTCGGGAACA 17180 Query 141740 CAGGGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGA 141799 | | ||| | | | |||||| || || ||| ||||| |||||||| | ||||| Sbjct 17181 CCGCGGTTTTGCGATTTTTACCGAGGCCGGCAATGCGGTTGCGCAGAATCGACTGCTGGA 17240 Query 141800 TCATTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGTGT 141854 ||| || |||||| || ||| ||||| | || ||||| || || Sbjct 17241 TCAGCCGCG-----ATTCCCAGCTGGTGCCAAGGCCGAACCCGAAGGTGACGAACGGCGT 17295 Query 141855 TTGTCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATCAAA 141914 || |||||||| |||||||| ||||| || || || || ||| ||||| || || | Sbjct 17296 CTGGCCGTTGGCGGTATGCAGTGTGTTGACCTCATACTCCAGCGACTGGAAGGCGTCGTA 17355 Query 141915 -CACATCTTTTTCAGTCTTTTCCATCGCATATG-TACG--ATCCAACGAAATTTTATACT 141970 ||| |||||||| || | ||||| | || |||| | || | ||| Sbjct 17356 GCAC-TCTTTTTCGGTACGGGCGCGGGCATAGCCTTCGGCATCC---GGGATCTGCCACT 17411 Query 141971 TTTTAGCATCCTTAACATGCTTTTCATATGTCATTTCTG-CATACGGAGCCAGCACTTTA 142029 || || || |||||||| | | | ||| | |||| |||||||||| | Sbjct 17412 CTTCGGCGATTTTGCGATGCTTTTTGAAGCTT-TCGCTGACGAACGGCGCCAGCACTTCA 17470 Query 142030 TCAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGCAATCTGTGCGGTGATCT 142087 || | || ||| | ||| || |||||||| || || | ||| ||| |||||| Sbjct 17471 TCGATGCGGTTG--ATGGTGGTGCCGCCGTAAATATGGCTGGCGACCTGGGCGATGATCT 17528 Query 142088 GTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGATGTCTGCGTTACCCA 142147 | ||| | | || || || | ||| || ||||| || ||||| || ||||| |||| Sbjct 17529 GCGCCGTCACCGCGGTGGCGGTAGAGATAGACTTCGGCGGCTCGATCTCCGCGTTGCCCA 17588 Query 142148 TCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACAGCAGTTTGTGTATGGCG 142207 |||| ||||| | | |||||| ||||||| ||| | ||| |||||| | || | | Sbjct 17589 TCTTAAAGCCCTGGGTCAGCATGCCTTTCAGATCGATCAGCATGCAGTT-GAACATCGGG 17647 Query 142208 TGAACGGGCT-GTAATCCAGATCATGATAGTGGATGTCGCCGGAGTCATGCGCTTCTACG 142266 | |||| |||||| || |||||||||||||| |||| || || || || Sbjct 17648 AAGAAGGGCGAGTAATCGAGGTCATGATAGTGGATCATGCCGCGCTCGTGGGCCATCACC 17707 Query 142267 ATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGCTACAATACCCGCCAGCAAA 142326 | || | || || | || | |||||| | ||||| || || ||||| ||||||| Sbjct 17708 ACATCGTGGGGCAGCAGGTGCTGCCGGGCGTAGTGCTTGGCGACGATACCGGCCAGCAGG 17767 Query 142327 TCGCGCTGTGTCGGGAATACCCTTGCGTCTTTGTTCGCGTTCTCGTTG 142374 |||||||| ||||||| || | ||| || || ||||| |||||| Sbjct 17768 TCGCGCTGGGTCGGGATGACTTTACTGTCCTTATTGGCGTTTTCGTTG 17815 >seq2516 Length=21774 Score = 150 bits (166), Expect = 2e-31 Identities = 145/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||||| |||||| |||||||| | |||||| ||||||||||| ||||| || ||||| | Sbjct 1961 TTACAGGCTTTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGA 1902 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 || ||||| || ||||| || ||||| || || || | ||| || || || || ||||| Sbjct 1901 GTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATG 1842 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 | || || || ||||||||||||||| ||||| || ||||| |||||||| || || Sbjct 1841 CTCAACCGCGTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCC 1782 Query 67923 TTCAAC 67928 ||| || Sbjct 1781 TTCGAC 1776 >seq2100 Length=19628 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 78490 ATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACC 78549 |||||| ||| || || ||| ||||||||||||||||| || | ||| ||||| Sbjct 19628 ATATGCACCAGCAGCGCATAGCTGGCGATATTGAACGGCAGGCCGAGGAACACATCGCAG 19569 Query 78550 GAACGCTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAG 78609 |||||||||||| ||| || || || |||| | ||| |||||||||||| | Sbjct 19568 GAACGCTGATACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGGAAGAAGGCG 19509 Query 78610 TGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATGATC 78669 || ||||| || |||||||||||||| || | ||||||||| || ||||||||| Sbjct 19508 TGGCACGGCGCCAGCGCCATTTTATCCAGCTCGCCGACGTTCCATGCCGAGACGATGATC 19449 Query 78670 CCGCGATCGTCTGGCGTGGTTTTCAGTTCGTTGACGATCCGAGC-AATCTGGTC 78722 | ||| ||| || | ||||||| | ||| | | ||| || |||||||| Sbjct 19448 CGGCGGGAGTCCGGGTCGTTTTTCAGCTGGTTCATCA-CCGTGCTGATCTGGTC 19396 >seq2053 Length=29219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 16242 CGAGCGAAGCGAGTTCCGTCAAGCGAAGCGAAGACGGATAGTTTACATCTGGTTAAAAAC 16301 ||||||||||||||||||||||||||||||||||||||||||| | | || ||||||| Sbjct 12614 CGAGCGAAGCGAGTTCCGTCAAGCGAAGCGAAGACGGATAGTTAGCGT-TGATTAAAAAA 12556 Query 16302 CATAC 16306 ||||| Sbjct 12555 CATAC 12551 >seq345 Length=175672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555 ||||| || || ||||| |||||||||||||||| || | |||| ||| | || ||| Sbjct 150901 GTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATATCGGCGGAGCGC 150842 Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615 || || ||| || || || |||| | ||| ||||||||| | ||||| || Sbjct 150841 TGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAACAGGCAGTGGCAG 150782 Query 78616 GGACGCAATGCCATTTTATCCA-GATCAACAGGGTTCCATGCGGAAACGAT--GATCCCG 78672 || ||| ||||||| ||| | || | | || ||||||||||||||||| || ||| Sbjct 150781 GGCGGCAGCGCCATTTCATCGACGAGCGCC-GGATTCCATGCGGAAACGATCAGACGCCG 150723 Query 78673 CGA 78675 ||| Sbjct 150722 CGA 150720 >seq272 Length=21754 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 67756 GTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGCATTAAAGCGAACT 67815 || || |||| || ||| || || |||| || || | ||||| || |||||||| || Sbjct 8208 GTGAACGTTCGGGAGATCACATCCTGCTGCTGCTCGCGGGTCAGCGCGTTAAAGCGGACC 8149 Query 67816 GCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATGTTTCACAGCATCT 67875 || || || || ||||||||||| | | || |||| ||| || |||| | ||||| Sbjct 8148 GCATAGCCGGAGACGCGGATCGTCAGATTCGGATACTGCTCCGGGTGTTCTATCGCATCG 8089 Query 67876 TCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACCTTCAAC 67928 ||| |||| || || ||||| ||||| || |||||||| || || || Sbjct 8088 AGCAGCTTTTCCCGGTTCAGTACATTGACGTTGAGATGCTGTCCCCCCTCCAC 8036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568273021196160