Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq501 107 2e-18 seq3869 91.5 1e-13 >seq501 Length=12468 Score = 107 bits (118), Expect = 2e-18 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 19431 TGGTTTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCG 19490 || ||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 4865 TGTTTTATTTGGTGGC--CCCTG-CTGGACTTGAACCAGCGACCAAGCGATTATGAGTCG 4809 Query 19491 ACTGCTCTAACCACTGAGCTACGGG 19515 |||||||||||||||||||| ||| Sbjct 4808 CCTGCTCTAACCACTGAGCTAAGGG 4784 >seq3869 Length=8584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 269/407 (66%), Gaps = 11/407 (3%) Strand=Plus/Minus Query 102612 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 102671 || || || || || ||||||||||| || ||||| ||||| ||||||||||| || || Sbjct 4763 CTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTG 4704 Query 102672 TTGATC-AAACTGGTGACACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 102730 ||||| | || |||| |||| || || || ||||| | | || ||| | Sbjct 4703 CTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCCACCTCCAGCGCGATTGTGAAA 4644 Query 102731 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATTGGTAGC 102790 || |||||| | || || |||||||| || | | ||| ||||| | | || ||| Sbjct 4643 TACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTGGGCAGC 4584 Query 102791 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT--- 102846 || ||||| || ||| |||| || || ||| |||| ||| |||| |||| Sbjct 4583 CCGATCCGCGGCGGCGAAGCCTTCCACACCGG-CTGCATTCCGTTCTACAAGCATTTCCA 4525 Query 102847 GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTA 102906 ||| || |||| || ||||| || ||||| | || || || ||||||| || Sbjct 4524 GAC---CGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTCT- 4469 Query 102907 TGTTCCC-ATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGAT 102965 | | ||| || |||||| || | || | | || || |||||||||||||| Sbjct 4468 TCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGTA 4409 Query 102966 TGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAAC 103012 || | ||||| | || | || ||||| ||| | ||||| ||| Sbjct 4408 CCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAAC 4362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501560568159560