Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029099.1 Length=49797 Score E Sequences producing significant alignments: (Bits) Value seq373 210 7e-50 >seq373 Length=63667 Score = 210 bits (232), Expect = 7e-50 Identities = 408/602 (68%), Gaps = 3/602 (0%) Strand=Plus/Plus Query 28636 GGACGGTTCGATTACCAATGCGAAGATCGGTAACGTCATTCAGTCCAACAACTACATCGC 28695 ||||||||| ||||| || |||||||||||||||| || | || || |||| | | Sbjct 40313 GGACGGTTCCATTACGAACGCGAAGATCGGTAACGAGATCCGCTCGAATAACTTTGTTGA 40372 Query 28696 CGGAGAACAAGGATGGATGATCAACAAGAATGGTAGTTCTGAGTTCCAGAACACTACTGT 28755 || ||||| ||| ||| |||| |||| ||| ||||| | ||| | || Sbjct 40373 TGGCTCGCAAGGCTGGCGTATCGCCAAGGATGGCTCTTCGCAGTTCAATAACGTGATCGT 40432 Query 28756 TCGCGGCACGATCTACGCGAATGACGGTATATTTAAGGGTACAGTGCAGGCAGAGGCGTT 28815 || |||| | | | |||||| ||| | || || || || ||||| || |||| Sbjct 40433 CCGTGGCAGGGTTGAAGCGAATAGCGGCGTGTTCCGTGGCACTGTCCAGGCGGATTCGTT 40492 Query 28816 TATCGGAGATATAGCAGTGGCAAAACGCTATGACAGCATGACGCTACGACGCAACCAGAC 28875 || || || || || ||||| ||| | || |||||| |||| | || ||||||||||| Sbjct 40493 CATTGGTGACATTGCGGTGGCCAAAAGTTACGACAGCCTGACTTTCCGCCGCAACCAGAC 40552 Query 28876 TGTGCAGCGCGATGGATATTACCAGAATCGTGGTTATGGGATGACTGTAGTTCTATCCTG 28935 || ||||| | || || ||||| | || ||| | ||||| || ||||| |||| Sbjct 40553 GGTACAGCGGAACGGTGCGTATCAGAACAGGGGGTATAGCATGACAGTGGTTCTGGCCTG 40612 Query 28936 CACGCTGATTGGTGAGACATATGGAACTGGCGCTTCAAACTTGGGCTATACCGTTGATGT 28995 ||| ||| | | |||| ||||| || ||| | | |||| |||||| |||| | Sbjct 40613 CACCCTGGTGTGCCAGACCTATGGGACGGGCAGT---GGCCTGGGGTATACCTCTGATAT 40669 Query 28996 AACTTTCAACATTGGTGGCCAGCAGGCTGTTCGCCGAATTTATATTGATGCTGGTAACAT 29055 || |||||||||||||| ||| ||| ||||| || | | ||||| ||||| || Sbjct 40670 TACGTTCAACATTGGTGGGCAGGAGGTAACCCGCCGTATCTTCGTCGATGCCGGTAATAT 40729 Query 29056 CTCCACAAGAACTACCGCGGTAGAACTTCGATTCGCTGCTGACTTGGTTGCTGATAACAA 29115 | | | || || || | ||| | || || || || | ||| |||||| |||| Sbjct 40730 CACAGGCGGCACCACGGCCTTTGAATTGCGGTTTGCCGCGCGCCTGGATGCTGACTACAA 40789 Query 29116 CAATGTTAGATTCTTTGTCAAGGCCACTGGTCGAGATGCCGTCACCGATTACACCGTGAC 29175 |||||| | |||||| ||| || | ||||| ||||| | ||||||||| || Sbjct 40790 CAATGTCGGCTTCTTTATCAGAGCGTCAGGTCGTACTGCCGCGATTGATTACACCTGCAC 40849 Query 29176 AATTGATAACATCACGGCCACTGCGTTCCGCACGAACAGTAACTCCTTCAGCTAATGGAG 29235 | | || |||||||| || || || || || ||| |||| | || || |||||| ||| Sbjct 40850 AGTCGAGAACATCACCGCAACCGCATTTCGGACGGACAGCAGTTCATTTAGCTAACAGAG 40909 Query 29236 GC 29237 || Sbjct 40910 GC 40911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159175427202866