Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq40 2520 0.0 seq3840 636 6e-178 seq1687 214 7e-51 seq2924 102 3e-17 >seq40 Length=14228 Score = 2520 bits (2794), Expect = 0.0 Identities = 1604/1742 (92%), Gaps = 0/1742 (0%) Strand=Plus/Plus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 5053 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 5112 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 5113 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 5172 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 5173 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 5232 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 5233 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 5292 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 5293 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 5352 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGAT 2137 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 5353 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGAT 5412 Query 2138 AGATGATCGGGGATTCAGTAATATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 2197 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5413 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 5472 Query 2198 CGTTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCG 2257 |||||||||||||||||||||| ||||| || || || ||||||||||| |||||||| | Sbjct 5473 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGG 5532 Query 2258 TGCAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTC 2317 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5533 TGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTC 5592 Query 2318 CGGAGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGACCCCGAGCCGTA 2377 | |||||||| || |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 5593 CTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTA 5652 Query 2378 ATTTTTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTA 2437 |||| |||||||||| ||| ||||| |||||| |||||||||||||||||||||| || | Sbjct 5653 ATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCA 5712 Query 2438 GGATAATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCC 2497 ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5713 GGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCC 5772 Query 2498 AAGAACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCCCGAATGTAGCGGCGAAA 2557 |||| | ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||| Sbjct 5773 AAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAA 5832 Query 2558 TATCTGAGAACAGAGCGGCAAGAGGTCGTCATCCCACGTTTTTTCCATGGAAGTAAGAAG 2617 |||||| |||||||||||||| | |||||||||||| ||||| |||| || | || || Sbjct 5833 TATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAG 5892 Query 2618 GGCGTTAATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACG 2677 | |||||| ||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 5893 AGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACG 5952 Query 2678 TTCTGTAGTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACC 2737 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 5953 TTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACC 6012 Query 2738 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATCGCTTTATGCCGTAACATCCGTTT 2797 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 6013 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTT 6072 Query 2798 GGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTGCGCG 2857 |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 6073 GGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCG 6132 Query 2858 GCGACATTCATCCATCCACTCGGTAACGCAGATCGGGTGATTACGGTCTTTGCGGTAAAT 2917 ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 6133 GCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAAT 6192 Query 2918 CCGACATGTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTC 2977 ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 6193 CCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTC 6252 Query 2978 GTTGATAATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 3037 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6253 ATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 6312 Query 3038 AGGGAAGGCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAG 3097 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 6313 AGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAG 6372 Query 3098 CAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGT 3157 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 6373 CAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGT 6432 Query 3158 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAG 3217 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6433 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAG 6492 Query 3218 CGTTGCGAGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGG 3277 ||||||||| |||||||||||| | ||||||||||||||||||||| || ||| ||| | Sbjct 6493 CGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGA 6552 Query 3278 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCG 3337 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 6553 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCG 6612 Query 3338 TCATCAAATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATG 3397 |||||||||||||||| |||||||||||||||||| || ||||| | || ||||||| Sbjct 6613 TCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATG 6672 Query 3398 CACAGCGATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTC 3457 || ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||| | | Sbjct 6673 CAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCC 6732 Query 3458 TCATTTTCTTCACGGGCAATTTGCCGGTAGTGTCGTGCCCATGACTGCTCTTCAATGCGA 3517 || || ||||||||||| || ||| ||||||| || ||||| ||| | |||| ||| Sbjct 6733 TCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGA 6792 Query 3518 TC 3519 || Sbjct 6793 TC 6794 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 4094 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 4153 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 4154 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 4213 Query 59111 CAATGAGTAGCAGAT 59125 |||||||| |||||| Sbjct 4214 CAATGAGTGGCAGAT 4228 >seq3840 Length=990 Score = 636 bits (704), Expect = 6e-178 Identities = 418/460 (91%), Gaps = 5/460 (1%) Strand=Plus/Plus Query 27401 CCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTA 27460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 CCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTA 79 Query 27461 ATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACTCATGCAATTATTGTGAGCA 27520 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| Sbjct 80 ATGAGCAGTGCAGATAGAGCTGCCCATGTCGATGGGCAACTCATGCAATTATTATGAGCA 139 Query 27521 ATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATT 27580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 ATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATT 199 Query 27581 TACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGC 27640 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 200 TACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGC 259 Query 27641 TGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTC 27700 |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| Sbjct 260 TGCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTC 319 Query 27701 CTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGT 27760 |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 320 CTTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGT 379 Query 27761 AATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC- 27819 |||||||| ||||| || | || | | |||||||||||| | |||| | ||| Sbjct 380 AATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCA 435 Query 27820 TTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 27859 || || || |||||||| |||||| | |||||||| Sbjct 436 TTGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 475 Score = 140 bits (154), Expect = 1e-28 Identities = 144/182 (79%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 27915 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCTGACGGGGAAC 27974 || |||| || |||||| ||||||||| |||||| ||| || |||| ||||||||| Sbjct 604 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAAT 663 Query 27975 TTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTT 28033 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 664 TCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGC 722 Query 28034 TCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28093 | || ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 723 TGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 779 Query 28094 GG 28095 || Sbjct 780 GG 781 >seq1687 Length=800 Score = 214 bits (236), Expect = 7e-51 Identities = 211/269 (78%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 27076 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 27133 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 533 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 592 Query 27134 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 27193 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 593 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 652 Query 27194 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 27253 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 653 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 712 Query 27254 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 27313 |||| || | || |||||||||||| || | ||| ||||| || |||| ||| Sbjct 713 CTCTGCGTGATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 771 Query 27314 GTCCCGTGCGTGAAGCCACCGGCACCGCC 27342 | |||||||||||||| ||||||| Sbjct 772 --TCAGTGCGTGAAGCCAC---CACCGCC 795 >seq2924 Length=35545 Score = 102 bits (112), Expect = 3e-17 Identities = 239/352 (68%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 11682 CGGTAAACCTGGCACCGGGAAAAATCACCTTGCAGCAGCGATTGGTAATCGGCTGATG-- 11739 ||||||||| ||||| || ||||| ||||| || ||||| ||| | || |||| || Sbjct 24607 CGGTAAACCGGGCACTGGCAAAAACCACCTGGCGGCAGCCATTTGCAACGAGCTGCTGCT 24548 Query 11740 GCGAAGGGGAGAAGCGTGATTATCGTCACCGTGTCCGATGTCATGAGTGTGTTGCATGAC 11799 ||| ||| || | || | ||| |||||||| ||||| | ||| | | || | || Sbjct 24547 GCGC-GGGAAGTCG-GTCTTAATCATCACCGTGGCCGATATTATGTCGGCGATGAAAGAT 24490 Query 11800 GGCTACGACAACGGCAAGTCTGGTGA-GAA-ATTT--TTACAGGAGCTTTGTGGCGTTGA 11855 || || |||| | | | | || ||| | || ||| | || || | || || Sbjct 24489 ACCTTCGGCAACCGGGAAACGAGCGAAGAACAGTTGCTTA-ACGACCTCAGCATGGTCGA 24431 Query 11856 CCTTCTGGTCCTGGATGAAATTGGCATGCAGCGGGATACGCGCAACGAGCAGGTCATACT 11915 ||| ||||| | ||||||||||| |||||| || | ||| | || ||||||| | Sbjct 24430 CCTGCTGGTGATCGATGAAATTGGTATGCAGACAGAGTCTCGCTATGAAAAGGTCATTAT 24371 Query 11916 GAACCAGATCGTCGACCGCAGAACGGCATCACTGCGCAGTGTCGGGATGCTGACGAACCT 11975 || ||||| || ||||| | | | || || | ||||||||| || ||| Sbjct 24370 CAATCAGATAGTTGACCGGCGCTCATCCTCCAAACGACCTACCGGGATGCTCACCAACAG 24311 Query 11976 GAATCACGCAGCGATGAGCACACTCCTCGGCGAGCGGGTGATGGACCGTATG 12027 ||| | || ||||| || ||| ||||||||||||||||||||||||||| Sbjct 24310 CAATATGGAAGAGATGAACAAACTGCTCGGCGAGCGGGTGATGGACCGTATG 24259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194613144652038