Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq345 96.9 3e-15 seq2100 84.2 2e-11 >seq345 Length=175672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || || |||||| ||| | ||| |||||||| || | || |||| ||| Sbjct 150768 ATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCC 150827 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||||||||||| || || || | || || | || ||||||||||| || || Sbjct 150828 TGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCC 150887 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 || || ||||| || |||| | || || ||| ||| || || || || | || Sbjct 150888 TATGCCCTGCTGACCCTCATGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTCGTT 150947 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || ||| |||| ||||||||| |||| ||||| |||||| Sbjct 150948 CACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 150990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||||| |||| ||||||||| |||| ||| || || | || || || Sbjct 150990 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 150931 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || ||| ||| || || | |||| || ||||| || || || || ||||||| Sbjct 150930 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 150871 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || | || || | || || || |||||||||||||| |||| || | | Sbjct 150870 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 150811 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | |||||||| ||| | ||| |||||| || || |||||||| Sbjct 150810 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCAT 150768 >seq2100 Length=19628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| | ||||||||| || ||| ||| ||||||||||| | || |||| ||| Sbjct 19489 ATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCC 19548 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| ||||| || || | || || | || |||||||||| || || || Sbjct 19549 TGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGC 19608 Query 34697 TACGCTCTGCT 34707 || || ||||| Sbjct 19609 TATGCGCTGCT 19619 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 6638 AGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGA 6697 ||||| || || || || || |||||||||| || | || || | || || ||| Sbjct 19619 AGCAGCGCATAGCTGGCGATATTGAACGGCAGGCCGAGGAACACATCGCAGGAACGCTGA 19560 Query 6698 TAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGG 6757 || ||||||||||| |||| || | ||||||||||| ||| ||| || ||||||||| Sbjct 19559 TACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGGAAGAAGGCGTGGCACGGC 19500 Query 6758 GGGAGCGCCAT 6768 | |||||||| Sbjct 19499 GCCAGCGCCAT 19489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448104236215440