Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4240 84.2 2e-11 >seq4240 Length=2116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/246 (68%), Gaps = 11/246 (4%) Strand=Plus/Plus Query 27776 AACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTG 27835 |||| ||| || |||||| ||||| || ||||| || ||||| || |||||| ||| Sbjct 1202 AACAACATA-TAGAATGCAGATTTTCGTAAAAACACTCACTGGTAAGACTATTACCCTTG 1260 Query 27836 ATGTCGAAAGCACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGA 27890 | ||||| || | ||| || |||| ||||| || || ||||| || Sbjct 1261 AGGTCGAGGGCTCGGAC-----ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGA 1315 Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 || |||| || |||||||| | || ||||||||||| || ||||| || | || Sbjct 1316 GGGAATTCCACCCGACCAGCAACGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCG 1375 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | | | || || ||||| ||||| || ||| ||| | |||||||| | ||| | || Sbjct 1376 TACCCTCTCTGACTACAATATCCAGAAGGAGTCAACTCTCCATTTGGTCCTCCGTCTCCG 1435 Query 28011 TGGCGG 28016 ||| || Sbjct 1436 TGGAGG 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355739977440429