Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3381 188 2e-42 seq1351 185 2e-41 seq4240 167 5e-36 seq3382 167 5e-36 seq8653 154 3e-32 seq13839 105 2e-17 >seq3381 Length=12314 Score = 188 bits (208), Expect = 2e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| ||||| | |||||| ||||||||||| |||||||| || || | ||||| Sbjct 1180 ACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGT 1121 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| || || || || || || || ||||| || |||| || Sbjct 1120 ACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACC 1061 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || || || || |||||||| |||| |||||||| || Sbjct 1060 TTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAG 1001 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || ||||||||||| ||||| | |||||| Sbjct 1000 AGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || || | ||| ||||| || || ||||||||||| || || |||| Sbjct 1639 TCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCAAG 1580 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| || ||||| | || || ||||| || || | Sbjct 1579 AGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGAT 1520 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| || ||||||||| || ||||| || ||||| ||||||| ||||||||| Sbjct 1519 ACCCTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTC 1460 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || || |||||||| || || | |||||| Sbjct 1459 GAGAGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| ||||| || ||||||||||||||||| |||||||| || || | ||||| Sbjct 951 CGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTG 892 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| || ||||| || || || || || || || | || Sbjct 891 CGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATACCC 832 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || |||||||| || || ||||| || ||||| |||| |||||||| || Sbjct 831 TCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGT 772 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || || | |||||| ||||| | ||||| || Sbjct 771 GTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCATGTT 728 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || || | ||| ||||| || || ||||| ||||| || || |||| Sbjct 1411 TCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAG 1352 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || || |||||||| || ||||| || ||||| || || || || | Sbjct 1351 AGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGAT 1292 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| || |||||||| || ||||| ||||| || || || | |||||||| Sbjct 1291 ACCCTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTC 1232 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| |||||||| || | |||||| ||||| | ||||| Sbjct 1231 GAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 >seq1351 Length=12664 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| | || | |||||| |||||||| ||||| |||||||| || |||| Sbjct 5156 TCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAG 5097 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| || ||||| || || || ||||| || || | Sbjct 5096 AGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGAT 5037 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| || ||||| || ||||| |||||||||||||||| |||||||| Sbjct 5036 TCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTC 4977 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4976 AAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| ||||| ||||| || || | || Sbjct 4928 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAG 4869 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||| || ||||||||||| || ||||| || || || ||||| || |||| Sbjct 4868 GGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAAT 4809 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| |||||||| || ||||| ||||||||||| || | || ||||| Sbjct 4808 ACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTC 4749 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| || |||||||| ||||| | ||||| Sbjct 4748 CAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 168 bits (186), Expect = 2e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| ||||| ||||| || || | || Sbjct 4700 TCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAG 4641 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||| || || |||||||| || ||||| | ||||| ||||| || || | Sbjct 4640 GGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGAT 4581 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||||||||| || | || ||||| Sbjct 4580 ACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTC 4521 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4520 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 >seq4240 Length=2116 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | || ||||| ||||| || ||||| || || || | || Sbjct 1439 TCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAG 1380 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| |||| |||||| || || ||||| || ||||| ||||| || |||| Sbjct 1379 GGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAAT 1320 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || ||||| ||||||||||| |||| || ||||| Sbjct 1319 TCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTC 1260 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 || || || ||||| || ||||| || ||||| || | ||||||| ||| Sbjct 1259 AAGGGTAATAGTCTTACCAGTGAGTGTTTTTACGAAAATCTGCATTCTAT 1210 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| || || || || || || | || Sbjct 1667 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAG 1608 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || |||||||| || || ||||| || || || ||||| || || | Sbjct 1607 AGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGAT 1548 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || ||||| |||||||||||||||| ||| ||||| Sbjct 1547 TCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTC 1488 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || | |||||| || || | |||||| Sbjct 1487 AAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq3382 Length=4522 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | || ||||| ||||| || ||||| || || || | || Sbjct 4405 TCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAG 4346 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| |||| |||||| || || ||||| || ||||| ||||| || |||| Sbjct 4345 GGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAAT 4286 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || |||||||| |||||||| || | || ||||| Sbjct 4285 TCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTC 4226 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4225 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| ||||||||||| || || | || Sbjct 4177 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAG 4118 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || |||| |||||| || || ||||| || || || ||||| || || | Sbjct 4117 GGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGAT 4058 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| |||||||| || ||||| |||||||| || || | |||||||| Sbjct 4057 TCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTC 3998 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || |||||||| || || | ||||| Sbjct 3997 AAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 4512 CCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCA 4453 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || | |||||| || || | |||||| Sbjct 4452 AGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 4409 >seq8653 Length=1535 Score = 154 bits (170), Expect = 3e-32 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || || ||||| || || | ||||| | ||||| || ||||||||||| || || Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| || || || || || || || | ||| ||||| || |||||||| || ||||| Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||||| ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 121 CTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCAC 180 Query 211103 AAACACCTGCATT 211115 ||| | ||||||| Sbjct 181 AAAGATCTGCATT 193 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || || ||||| || || | || Sbjct 196 TCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCGAG 255 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| || |||||||| || ||||| | |||||||| || || || | Sbjct 256 AGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGAT 315 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| || |||||| || ||||| ||||| |||||||||| || ||||| Sbjct 316 ACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACCTC 375 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT-TTAT 211119 || ||||| |||||||| || | ||||||||||| | |||||| |||| Sbjct 376 TAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATTATTAT 426 >seq13839 Length=228 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| ||||| ||||| || || | || Sbjct 154 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAG 95 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||| || ||||||||||| || ||||| || || || ||||| || || | Sbjct 94 GGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGAT 35 Query 211010 TCCTTCCTTGTCCTGGATCTT 211030 ||| |||||||| || ||||| Sbjct 34 TCCCTCCTTGTCTTGAATCTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158732782898855