Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8653 123 2e-23 seq3381 116 3e-21 seq1351 107 1e-18 >seq8653 Length=1535 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || ||||| || ||||| || || || || | | Sbjct 421 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTC 362 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || ||| ||| |||||||||||| | || || ||||| Sbjct 361 TGACACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCA 302 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||||||||| ||||| ||||||| |||||| | ||||| ||||| Sbjct 301 ACAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAA 242 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 241 CATTCAGAAGGAGTCTAC 224 >seq3381 Length=12314 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || ||||||||||| || ||||| | || Sbjct 959 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACGATCACTCTTGAGGTTGAGGGCTCG 1018 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| ||||| |||||| | || || || || Sbjct 1019 GACACCATTGAGAATGTCAAGGC-TAAGATTCAAGACAAGGAAGGTATTCCACCCGACCA 1077 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||| ||||||| | || || | || || ||||| Sbjct 1078 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGTACCCTCGGTGACTACAA 1137 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 1138 CATCCAGAAAGAGTCCAC 1155 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| ||||| | | Sbjct 1415 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACTCTCGAGGTTGAAGGCTCT 1474 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| ||| || || || || ||| | || || || || Sbjct 1475 GATACCATTGAGAACGTAAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCCGACCAG 1534 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| ||||| || || || || | |||||| | ||||| |||||| Sbjct 1535 CAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGGCGACTACAAC 1594 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATC 23840 || ||||| || || || | || || ||| | || | || ||||| || Sbjct 1595 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTCCGTGGAGGTTC 1644 Score = 105 bits (116), Expect = 5e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 23599 TAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 |||| | | || ||||| || || ||||| || | || || || || ||||| || || Sbjct 719 TAATCATTAAACATGCAAATCTTTGTTAAGACTTTGACTGGCAAGACCATCACACTGGAG 778 Query 23659 GTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 ||||| | | |||||| |||||| | |||| | || | | || || || ||| | Sbjct 779 GTTGAGGGCTCCGACACTATTGAAAATGTTAAGGCTAAGA-TCCAAGATAAGGAGGGTAT 837 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || ||||| |||||| | || ||||| ||||| || || || || | ||||| | Sbjct 838 CCCACCCGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACCCT 897 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || ||||||||||| | ||| | || | || |||||||||| Sbjct 898 CGGTGACTACAACATCCAGAAAGAGTCCACTCTTCATCTCGTCCTCAGACTGCGAGGAGG 957 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| || ||||| ||||| ||||| || Sbjct 1187 ATGCAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCG 1246 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || || || || || || ||| | || || ||||| Sbjct 1247 GATACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 1306 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| ||||| || || | || ||| | ||||| |||||| Sbjct 1307 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAAC 1366 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || || ||| | || | || ||||| Sbjct 1367 ATTCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTCCGTGGAGG 1413 >seq1351 Length=12664 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 4932 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCT 4991 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || || Sbjct 4992 GACACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAG 5051 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || || | |||||| | ||||| || ||| Sbjct 5052 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAAC 5111 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| |||||||| | || || || || || | || ||||| Sbjct 5112 ATTCAAAAGGAGTCCACCCTTCACTTGGTATTGAGACTTCGTGGAGG 5158 Score = 105 bits (116), Expect = 5e-18 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || | Sbjct 4476 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4535 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || ||| | || || || || Sbjct 4536 GACACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4595 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||||||||| ||||| || || | |||||| | || || |||||| Sbjct 4596 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAAC 4655 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| |||||||| | || || ||| Sbjct 4656 ATTCAAAAGGAGTCCACCCTTCACTTGGTT 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337893319099316