Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq6347 187 8e-43 seq11225 178 4e-40 seq3523 132 2e-26 seq2460 113 1e-20 seq85 91.5 5e-14 >seq6347 Length=2804 Score = 187 bits (206), Expect = 8e-43 Identities = 281/393 (72%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 33921 GCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC- 33979 |||||| || || | |||||| || | ||| ||||| | ||| || || |||| Sbjct 394 GCCCGGCGCCAGGTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCC 335 Query 33980 --TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||||| ||||| || || || |||| || | ||||| | ||| | || ||| Sbjct 334 GATTGGC---CCGTTACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGT 278 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 277 CTCCGGGTGATACACCTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGAT 218 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 ||| ||||| || |||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 217 CGCTCCGGATTCCCGCAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGA 158 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGC- 34216 ||||||||||||||||| | | ||| ||| | ||| ||||||| |||| | Sbjct 157 TCGGTTGAGCTGCGACAGGGCAACCACCGGGCAGTTGAATTCCTTGGCCAG-GGCTTTCA 99 Query 34217 ACTGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTGAC-TTGCCGGAGC------TC 34269 || |||||| || ||| | || | ||| || | || | || ||||| || Sbjct 98 ACGAGCGGGAAATCTCGGAAATCTCGTTGGTCCG-GCTGTCACCGCTGGAGCCCGGGATC 40 Query 34270 TCCAGCAACTGCAGGTAGTCCACCACCAGCAGG 34302 | || ||||||||||||||| | || | |||| Sbjct 39 TGCATCAACTGCAGGTAGTCGATCATGATCAGG 7 >seq11225 Length=5908 Score = 178 bits (196), Expect = 4e-40 Identities = 197/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 33930 GAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGCTTGGCTCGCC 33989 |||| || | || || | | ||| || | |||||| ||| || || | | || || Sbjct 1792 GAGCGGCACAAAACGAGTTTCCTTGCCAATAAACGCGGTCCGCACGGTACCGGTTTCACC 1733 Query 33990 GTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATA 34049 ||| |||||||| ||| ||||||||| || || || ||||| |||||||||| || Sbjct 1732 GTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTACTCAGTGTCCGGGTTGTA 1673 Query 34050 GACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTC 34109 |||||||||||| || ||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 1672 GACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGCTCGATCGCGCCGGACTC 1613 Query 34110 GCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTC-CAGGGAGCGGTTGAGCT 34168 |||| ||| | ||| || |||||||| ||||||||||| || | |||| | || Sbjct 1612 CCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCGCTGCTCACACTG-GCGGGACAACT 1554 Query 34169 GCGACAGCACGATCACGGGG 34188 |||| ||| |||| |||||| Sbjct 1553 GCGATAGCGCGATGACGGGG 1534 >seq3523 Length=12220 Score = 132 bits (146), Expect = 2e-26 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 34044 GTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCC 34103 |||||||||||| || ||||| | ||||||||| | |||||| ||||| ||||| | || Sbjct 5408 GTGATAGACCTCATCACGGTAAATGAACATGATTAAGTCGGCATCCTGTTCGATAGAGCC 5467 Query 34104 GGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGT 34162 |||||| |||||||| || | | ||| ||||| ||||| ||||||||||| ||||||| Sbjct 5468 GGACTCACGCAGGTCGGAGTTGACCGGGCGCTT-ATCGGCGCGCTGCTCCAGCGAGCGGT 5526 Query 34163 TGAGCTGCGACAGCACGATCACGGG 34187 | |||||||||||| | | ||| || Sbjct 5527 TAAGCTGCGACAGCGCCACCACCGG 5551 >seq2460 Length=7260 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34042 GGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCC 34101 ||||| || |||||||| ||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 4120 GGGTGGTACACCTCGTCCCGGTAGACGAACATAATCAGGTCCGCGTCCTGTTCAATCGCA 4179 Query 34102 CCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGG 34161 ||| || |||||||| | | ||||| ||||| || ||||| ||||||| ||| Sbjct 4180 CCGCTATCACGCAGGTCTGCGTTGATCGGACGCTTATTTGGCCGTCGCTCCAGTTCTCGG 4239 Query 34162 TTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||| || ||| | | ||| ||| Sbjct 4240 TTGAGCTGGGAAAGCGCAACCACCGGG 4266 >seq85 Length=367292 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| || || ||||| || | ||||||||||||||||||||||| |||||| || ||| Sbjct 201216 TCGTCGCGATAAACGAAGATCACCACGTCGGCGTCCTGCTCGATCGACCCGGATTCACGC 201157 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| || | | ||| ||||||| | || ||| |||| ||| |||||| || Sbjct 201156 AGGTCGGAGAGCTGCGGGCGCTTGTCTTCGCGGCT-TTCCACCTGACGGGAGAGCTGTGA 201098 Query 34173 CAGCACGAT 34181 |||| |||| Sbjct 201097 CAGCGCGAT 201089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160410213169230