Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq3931 289 7e-74 seq8746 125 2e-24 >seq3931 Length=1953 Score = 289 bits (320), Expect = 7e-74 Identities = 559/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Plus Query 979 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1038 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 874 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 932 Query 1039 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1097 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 933 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 992 Query 1098 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1157 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 993 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 1052 Query 1158 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1216 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 1053 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 1111 Query 1217 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1276 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 1112 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 1171 Query 1277 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1336 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 1172 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 1225 Query 1337 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1393 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 1226 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 1270 Query 1394 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1453 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 1271 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 1330 Query 1454 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1513 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 1331 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 1390 Query 1514 AACTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1573 ||||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 1391 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 1450 Query 1574 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1633 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 1451 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 1510 Query 1634 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1693 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 1511 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 1570 Query 1694 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1753 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 1571 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 1630 Query 1754 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1787 | ||||| ||| || || || || |||| ||| Sbjct 1631 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 1664 Score = 129 bits (142), Expect = 1e-25 Identities = 213/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 295 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 354 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 172 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 231 Query 355 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 414 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 232 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 291 Query 415 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 474 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 292 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 351 Query 475 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 532 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 352 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 409 Query 533 CAGGAGCCGTGACCAGCGCGCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 592 |||| |||||| || || | | ||||| |||| ||| | || ||||| ||||| Sbjct 410 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 469 Query 593 TC 594 || Sbjct 470 TC 471 >seq8746 Length=2069 Score = 125 bits (138), Expect = 2e-24 Identities = 121/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 8839 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8898 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 1750 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 1692 Query 8899 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8956 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 1691 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 1634 Query 8957 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 8988 | || || |||| || ||||| ||||||| Sbjct 1633 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 89.7 bits (98), Expect = 1e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9238 ATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCT 9297 ||||||||||||||| | || || |||| || || ||||| || || ||| ||| Sbjct 1370 ATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGC 1311 Query 9298 CGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTG 9357 ||||| ||||| ||||| |||||||| ||| | ||| |||||||||| | |||||| Sbjct 1310 CGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTG 1251 Query 9358 GTCGAACTCCAGCGCCTGGGCTGG 9381 | ||| | ||| |||||||| Sbjct 1250 GCCGAGTTTGCCCGCTTGGGCTGG 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117051951542034