Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq1687 978 0.0 seq40 100 8e-17 seq501 96.9 9e-16 seq62 86.0 2e-12 >seq1687 Length=800 Score = 978 bits (1084), Expect = 0.0 Identities = 638/702 (91%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21107 GTGGCGGGGCTATTGCCATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21166 ||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 21167 TGGAAGGTGTCAGATACAAACCATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 21226 ||||||||||||| |||| ||||||||| || | |||||||| | |||||| ||| | | Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 21227 GCCACGTCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCC 21286 | || ||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 21287 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 21346 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 21347 TACCGGAAACAACGCGCGGCGCTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATT 21406 |||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 21407 TCAGAACATCGACGCTTCTTCGCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACC 21466 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 21467 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 21526 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 21527 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 21586 |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 497 Query 21587 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 21646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 557 Query 21647 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 21706 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 558 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 617 Query 21707 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 21766 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 618 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 677 Query 21767 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 21808 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 678 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq40 Length=14228 Score = 100 bits (110), Expect = 8e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 5127 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 5186 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 5187 GATG----TTATTGCTGC 5200 |||| | |||||||| Sbjct 3108 GATGCTGTTCATTGCTGC 3125 >seq501 Length=12468 Score = 96.9 bits (106), Expect = 9e-16 Identities = 98/128 (77%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3398 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3446 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3447 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACC 3506 |||||||| || || || ||||| | || || |||||||| ||||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3507 ATTTCGAT 3514 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3317 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3368 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135570542110120