Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq25947 179 1e-40 seq25858 138 4e-28 seq12773 136 1e-27 seq6771 136 1e-27 seq2722 100 9e-17 seq2286 93.3 1e-14 >seq25947 Length=437 Score = 179 bits (198), Expect = 1e-40 Identities = 189/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 7673 GGTCAGTCGGCAGCAGATCGAGTCGCACGACCCGAACAAGGTGTGCAGC-AAGGGCCTTG 7731 ||| || || |||||| | ||| |||||||||| | |||| | || | ||||| || | Sbjct 434 GGTGAGCCGCCAGCAGGTGGAGACGCACGACCCAACCAAG-TCCGCGGGTAAGGGTCTGG 376 Query 7732 CCGCGAAGTGGCGGATCCTCTTCGAGGACACCCGCAAGCGCTTCCGCGAGGAGATCGCCG 7791 | | ||||||| || ||| ||| | |||||| | ||||| ||||| ||||||| ||| | Sbjct 375 CGGTGAAGTGGGTGACCCTTTTCCACGACACCAGGAAGCGGTTCCGAGAGGAGACCGCAG 316 Query 7792 ACATCCCGATCGCCAACCGCGCCTACCGACTGAGGGCATTGGGTCGGATGGCTGAGCGCG 7851 | |||||||| ||||||||||||| ||| || | | |||| ||| |||| | | | Sbjct 315 AGATCCCGATTGCCAACCGCGCCTTCCGGCTTCGTGGCCTGGGGCGGCTGGCCGGGAAGG 256 Query 7852 CCGAGGGCATGCGAAACATGGCCCTGGCTGCCCAGCTTTACGAGCAGGCCGCCAAGGAGT 7911 ||||| |||||| ||| |||| ||| ||||||||||||||||||| || ||||| ||| Sbjct 255 CCGAGAACATGCGCAACCTGGCGCTGACTGCCCAGCTTTACGAGCAAGCAGCCAAAGAGA 196 Query 7912 CGGGTG 7917 |||||| Sbjct 195 CGGGTG 190 >seq25858 Length=775 Score = 138 bits (152), Expect = 4e-28 Identities = 252/369 (68%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 7045 CAATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAG 7104 ||| |||||||| |||||||||| || || || || | ||||| | || || Sbjct 392 CAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTGGGCGTCGTCGAG 451 Query 7105 CTTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGG 7164 |||| |||||||||| | || || |||| ||| ||| | || |||| ||| || Sbjct 452 CTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGG 511 Query 7165 AGCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAG 7224 | |||||||| | | | ||| || |||||| ||||||||| | ||||| Sbjct 512 CGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGC 571 Query 7225 GTTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGC 7284 || | || ||||||||||| ||||||||| |||||||| |||| ||||||||||| Sbjct 572 ATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGC 631 Query 7285 ATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAACCAATATGGCGAGCCCAA 7344 ||| ||||||| ||||| || ||| | || | | | || | || || | || Sbjct 632 CTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAGTACGGTCAACCAGC 691 Query 7345 GTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGT 7404 |||||| | || || || ||| | ||||| | || || ||||| || |||||||| Sbjct 692 ATTCACCCAAGACGGTGCACCGAAGATCAAGCTGCAGGGCCACGACGTGGAAGAGTTCGT 751 Query 7405 CGGCGTGGT 7413 ||| || || Sbjct 752 CGGTGTCGT 760 >seq12773 Length=2517 Score = 136 bits (150), Expect = 1e-27 Identities = 322/478 (67%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 41483 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGACAGCACGTAA 41536 ||||||||||| |||||| || |||||||||||||| || ||| |||||| Sbjct 179 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 235 Query 41537 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACTT--- 41593 |||||||| ||| | |||||| |||| || ||| ||| || |||| || || Sbjct 236 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 292 Query 41594 GTGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 41653 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 293 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 352 Query 41654 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 41712 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 353 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 411 Query 41713 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 41772 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 412 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 471 Query 41773 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 41831 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 472 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 521 Query 41832 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 41888 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 522 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 578 Query 41889 GCATGGCCATAAGCCGCTCCATCTTCTCGATGTCGCACGCAGGGTCAGCAGCGGCACG 41946 ||||||||| || ||||||||||||||||||||||| | || || || || ||||| Sbjct 579 GCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCGCAGGTTGGATCGGCGGCAGCACG 636 >seq6771 Length=3497 Score = 136 bits (150), Expect = 1e-27 Identities = 208/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 31673 GGGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTA 31732 ||| ||||||| |||||| || ||||| || | ||||| ||||| || |||||||| Sbjct 2296 GGGTGACGGCTTCAAGTACCGTGGCCGCGGCCTAATCCAGATTACCGGACGTGCGAACTA 2237 Query 31733 CCGCGCCGC-CGGCGACGGGCTGGGCCAGCCGCTGGAGCAGGAACCCGAGCTTCTCGAGC 31791 ||| || |||||| | ||||||| | |||| | || |||||||| ||||||| Sbjct 2236 T-GCGGCGTGCGGCGAGGCCCTGGGCCTGGACCTGGTCAATGAGCCCGAGCTGCTCGAGC 2178 Query 31792 AACCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAACGACC 31851 | || || |||||||| |||||||| |||| ||| || | ||| ||||| | Sbjct 2177 AGCCACAGCACGCGGCGATGTCGGCGGCGTGGTTCTGGTCCTCCCGCGGACTGAACACAC 2118 Query 31852 TGGCCGACCGCGGCGAGTTCGCCGCC-ATCACTCGGCGCATCAACGGCGGCACGAACGGC 31910 |||| || | ||||| || || | |||||| |||||||||||| || || ||||| Sbjct 2117 TGGCAGATCAAGGCGATTT-GCTGAAGATCACTAAGCGCATCAACGGTGGTACCAACGGA 2059 Query 31911 CAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTGCTGTCGTGA 31961 | ||| || || | |||||||| | |||| || ||||||| ||||| Sbjct 2058 CTGGCCGACCGTCAGGCGCTGTATGGCAAGGCGCTGAAGGTGCTGGCGTGA 2008 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 31332 ATGCCCATCACTGAGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCG-AGGGCCGG 31390 ||| | |||||||||||||| ||||||| ||||||||||||||||| ||| || ||||| Sbjct 2541 ATGTCGATCACTGAGCAGCAACTGCTGCAGATCCTCCCGAACGCCGG-TCGCAGTGCCGG 2483 Query 31391 CGTTTTTGTTGGTGCGCTGAACCGCGGGATGACGCGCTTCGGTATCACGTC--GCCTGTG 31448 |||||| ||| |||| | || | ||||| || | | || |||| | | || Sbjct 2482 CGTTTTCGTTCCTGCGTTAAATACGGCCATGACCCGGTATGCCAT--CGTCAATCGTCTG 2425 Query 31449 CGCGCGGCGACGTTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGTTG 31496 ||| || | ||| ||||||||||||| || || ||||| ||| Sbjct 2424 CGCATCGCCGCCTTCATCGCCCAGGTCGGTCATGAGTCAGGCCAATTG 2377 >seq2722 Length=2297 Score = 100 bits (110), Expect = 9e-17 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||| ||| | ||| ||||| ||||| ||| | ||||||||||||||| |||||| Sbjct 1344 GGCGATGGCCAGAAGTATCGCGGCCGCGGCCTGATCCAGATCACCGGCCGGCGCAACTAC 1403 Query 31734 CGCGCCGCCGGCGACGGGCTG---GGCCAGCCGC---TGGAGCAGGAACCCGAGCTTCTC 31787 | || | | | | ||| ||| | || || ||| |||| ||| | || Sbjct 1404 CTGGCGTGCAGTCAGGCACTGTTCGGCGATGAGCGTTTGTTGCACCAACCGGAGTTGCTG 1463 Query 31788 GAGCAACCGGAGTGGGCG-GCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAA 31846 ||| ||| | |||||| |||| || || || |||| ||| | | |||||||| Sbjct 1464 GAGACGCCGCAATGGGCGTGCGAA-TCTGCCGCGTGGTTCTGGCAGCGCAATGGCTTGAA 1522 Query 31847 CGACCTGGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAA 31906 ||| ||||| |||| | | ||||| || | ||||| ||||||||||| || ||| || Sbjct 1523 CGAGCTGGCTGACCAGGACCAGTTCACCACGATCACCCGGCGCATCAATGGTGGCCTCAA 1582 Query 31907 CGGCCAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTG 31952 ||| | || | | || || ||||||| |||||||||| |||| Sbjct 1583 CGGTCTGGAGAACCGTATGCAACTGTGGGCGCGGGCGAAGGCGGTG 1628 >seq2286 Length=7100 Score = 93.3 bits (102), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 4555 GGCGCGGAAGGCTATCGCCGAC--CGAGAGCGGCGGGAGATCAAGGTTCGGAAGGAGAGG 4612 |||||| ||||| | |||||| |||| ||| || |||||||||| || ||||||| | Sbjct 6614 GGCGCGCAAGGCCCTGGCCGACATCGAGCGCGCCG--AGATCAAGGTCCGCAAGGAGAAG 6671 Query 4613 CTGAAGAGTAAGGCGGATCACCTGCGCGAGGCTCAGCAGGCATTCAACGAATTCATTCGC 4672 ||||||| | |||||||||||| || | ||||||||||| || | | ||||| Sbjct 6672 CTGAAGAACAGGGCGGATCACCTCAAGGACACACAGCAGGCATTTAATGCCTGGGTTCGC 6731 Query 4673 CTGCGCGACGCCGACCAGCCGTGCATCAGTTGTGGCCGCCACCA 4716 || || || | | ||| ||| |||| || |||||||| || Sbjct 6732 GCCCGTGATGCGGCACTGCCATGCGTCAGCTGCGGCCGCCATCA 6775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156731446689130