Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq20360 273 5e-69 seq10876 228 2e-55 seq24971 132 1e-26 >seq20360 Length=1957 Score = 273 bits (302), Expect = 5e-69 Identities = 441/637 (69%), Gaps = 28/637 (4%) Strand=Plus/Plus Query 31613 ACTGACAGTTCGCGCATCGCCGCTGTTGCCAGAAAGCCCGACCGAGACTGATAGCGCTTA 31672 || || |||||||||| ||||| || ||||| || || || || || |||||| | Sbjct 481 ACGGAAAGTTCGCGCAAAGCCGCCGTCGCCAGGAACCCAGAGCGCGAGGCATAGCGATGG 540 Query 31673 TCCACCTTCACGCGCTCATCGATCCGCTGCAGAAGGTGTTCCGGGAGCGTCGCATTAAAG 31732 || | ||| ||||||||||| || | || ||| || || || || | || || || Sbjct 541 TCTTTTTGCACTCGCTCATCGATACGATTCAAAAGTTGCTCAGGCAGTGAGGCGTTGAAC 600 Query 31733 CGTACGGCCTTGCCCAGGTACGGGGTCACGTCGAAGTCAACCACCGCCCATACGCCACCT 31792 | || | |||||||||||| || || | || ||||| | ||||||||| |||||||| Sbjct 601 CTGACTGACTTGCCCAGGTAAGGAGTGAGATCAAAGTCGATCACCGCCCACACGCCACCC 660 Query 31793 TCGAAGTCCGGATTCTTCATATGGGCGTCAACGTCCTGCGGCTGGGGTAGCTCTTCGCCG 31852 | ||||||||||||| || |||| |||| || || | ||| || ||| || | Sbjct 661 GCAAAGTCCGGATTCTCCAAATGGACGTCGACCTCTCTAGCCTGAGGAAGCCGCTCCTCA 720 Query 31853 TCCGTAACCAAGCCTTCGAAGTGCAAGGCCAGCGCCTCTTCTACATTGGCCAGGGCCTCG 31912 || | |||||| || |||| ||||| || | || || ||||| |||| || ||| Sbjct 721 TCAGCAACCAATCCCTCGAGGTGCAGCGCTAAAGCTTCGCGGACATTATCCAGAGCTTCG 780 Query 31913 GACACCGTAGCGCCGGCAGAGAAGCAACCCGGCACATCGGGCACAGTCACGCCATAGTCA 31972 || | || | ||| ||||| |||||||| ||||| || || || ||||||| || || Sbjct 781 GAAAAGGTTGTGCCCGCAGAAAAGCAACCTGGCACGTCCGGGACGGTCACGCTGTAATCT 840 Query 31973 GAATCAGGGTCTTTGTGTAACACCACGGGGAATTTCATGGCT-CTACTCCG--TGAG--- 32026 ||||||| ||||||||||| |||||| || |||||||| | || || | |||| Sbjct 841 GAATCAGCGTCTTTGTGTATCACCACTGGAAATTTCATTTTTCCTCCTTTGAATGAGCCG 900 Query 32027 ----------ATTGACC------------GGCCTCACTTGAGGCCGGCTTGTTTCAGTAT 32064 ||| ||| | | |||||| ||||| ||| ||||| || Sbjct 901 CAGCGGGATCATTCACCACATAACCTACGGTCATCACTTCAGGCCTGCTGATTTCAAAAT 960 Query 32065 GTTGTTCAGGGTTCCTTTCGGTATCGTCGAGGACGGATGTTGAACCGTCACCTTTCCAGG 32124 | ||| || ||| || || | |||| || ||||| ||||||||||| || || Sbjct 961 GCTGTGCAAGGTCCCCTTGGCTATCTCTGATTTAGGATGAGGAACCGTCACCCGGCCGGG 1020 Query 32125 CTTTGAAGGATGTTTGAACTGGTGGTGGCTACCTTTCACCGCCACTTCATACCAGCCATC 32184 ||| | | || ||||| || ||||| || |||||| ||||||| ||| |||| ||||| Sbjct 1021 CTTGGTTGAGTGCTTGAATTGATGGTGACTGCCTTTCGCCGCCACCTCAAACCATCCATC 1080 Query 32185 CTCCAACAGCAAATCAATCACTTCCCTACTCCGCATC 32221 | ||| |||||| ||||| || || || || | |||| Sbjct 1081 CGCCATCAGCAAGTCAATTACCTCTCTGCTTCTCATC 1117 >seq10876 Length=3003 Score = 228 bits (252), Expect = 2e-55 Identities = 785/1208 (65%), Gaps = 42/1208 (3%) Strand=Plus/Minus Query 1124 GTGGCACGACATCGACTGGTGTCGG-GTCCAGCGGAATGTCCGGGGAATGCAGGTACGGA 1182 |||| || |||||| ||| ||| || || || |||| | || |||| | || | Sbjct 2075 GTGGGACAGCATCGATTGGA-TCGCCGTACAACGTCGTGTCAGAGGGCTGCAAGCGCGTA 2017 Query 1183 TTGCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAACGGATGCTGA 1242 ||| ||||||| | || |||| | || |||||| ||||| ||| || |||||| Sbjct 2016 TTGTGAAGGCTGTACAAGATGGCAGACATAACAAGGTGAAAGCCCTGCAATGGCTGCTGA 1957 Query 1243 CCCGCTCGA-CGTCGGCCAGGTACCTGGCTGT---ACGGAGAGTCACTGAAAACCAGGGC 1298 | | |||| | ||| ||| | || |||| |||| || |||||||| | ||| Sbjct 1956 CTCACTCGTTCAGTGGCAAGGCATTTG-CTGTGAAACGG---GTGTCTGAAAACAAAGGC 1901 Query 1299 AAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCG 1358 || || | || || ||| || ||| |||||||| ||||| ||| Sbjct 1900 AAAAATACCCCCGGCGTGGACAAGGTTACTTGGAATACGCCTAGGGCCAAGCTCGGCGCG 1841 Query 1359 GCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCG 1418 | | ||||| |||| || ||| || | || || ||| ||||| | || ||| Sbjct 1840 ATAGAGTCGTTGACGCGGCGAGGTTACTCGCCGCTCCCGCTTCGGAGAGTGCTTATTCCG 1781 Query 1419 AAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAG 1478 ||| ||||| || | | || || || || || | |||| | |||| |||||| Sbjct 1780 AAGAAAAACGGCAAAACGAGACCTCTTGGAATTCCCGCGATGAAATGCCGGGCCATGCAG 1721 Query 1479 GCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTAT 1538 || || | ||||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 1720 GCGCTTCATCTGCTGGCTCTGGAACCGATAGCGGAAACTACCGGCGACCCGAACTCTTAT 1661 Query 1539 GGCTTCAGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCC 1598 || |||||| || || || || |||||||| | | |||| || | | || || Sbjct 1660 GGGTTCAGGCCGGAACGCTCAACTGCGGATGCCGTCGCACAGTGCTTTGGTGTGCTGTCA 1601 Query 1599 GGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATC 1658 |||| || || ||||| | | |||| ||||| ||||| ||||| ||| | ||| Sbjct 1600 CGAAAAGCAAACGCGGAATGGGTGTTAGAGGGCGACATTCAAGGCTGTTTCGACAATATC 1541 Query 1659 AATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTG 1718 | ||||||||| | | | | | |||| |||||||| ||| | | ||||||| | Sbjct 1540 AGCCATGACTGGTTGATCGCCAACATTCCCATGGACAAGGCGATTTTGCAGAAATGGCTC 1481 Query 1719 AAGGCCGGCGTGATCCACAAAGGCCAGCT----CCAGGCAACGGATGCTGGAACACCTCA 1774 ||| || || || || ||||| || || ||| | ||||| || || Sbjct 1480 CGGGCTGGTTATGTCTACCAAAAGCAGCTATTCCCCAGCCACG----CCGGAACCCCGCA 1425 Query 1775 AGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCT 1834 || || ||||| || || ||||| |||||| ||| ||||| ||||| | ||| Sbjct 1424 GGGAGGCATCATATCCCCGGGGTTGGCGAACATGACGCTGGATGGGTTGGAAGCGATGCT 1365 Query 1835 C---AAGCGA-----CACCTGGGCGTGACAAGGGCGAAGAAGCTGAAACTCAATGTGGTG 1886 ||| || || | | ||| || |||| || || | | |||||| Sbjct 1364 GGCGAAGAGATTTCCCAACGCGAAGTGGACAGCCCGAAAAA--TG---CGC---GTGGTG 1313 Query 1887 CGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTC 1946 || ||||| || || ||| ||||||| ||| || || |||||||| |||||| Sbjct 1312 CGTTATGCAGATGATTTCATCATCACTGGTTGTTCGAAAGAATGGCTGGAGAATGAAGTC 1253 Query 1947 AAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG 2006 | ||| || | | || ||||| | || || || ||||||| ||| ||||| Sbjct 1252 AGGCCCGCCGTGGTTGAATTTCTGGCAGAGCGTGGACTTGTCCTCTCTCCGGAAAAAACC 1193 Query 2007 CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAAC 2066 ||| | ||||||| | || |||||||||||||| |||||| | |||||||||||| Sbjct 1192 AAGATAACGCACATAGGGGACGGGTTCGACTTCCTCGGATGGAACCTGCGCAAGTACAAC 1133 Query 2067 GGGAAGCTTCTGATCAAACCCAGCCAGAAGAAC-GCGAAAGCGTTCTAC--GGCAAGGTG 2123 || ||||| |||||||| || | || |||| || | | ||||| | |||| || Sbjct 1132 GGCAAGCTCCTGATCAAGCCGTCCAAGGCGAACATCG---GGGCTCTACTTGCCAAGCTG 1076 Query 2124 AAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAAT 2183 ||| | ||| | |||| || ||| | | || | ||||||| | ||| || Sbjct 1075 CGAGAGTTGATCAAGACCAACAAAACGATACGACAGGCTAACTTGATAGGTTTGCTCAAC 1016 Query 2184 CCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCA-GTGGTTGCCAAGCAAACGTTCAG 2242 ||| |||| || ||||||||| ||||| ||| || || || |||||| | |||| Sbjct 1015 CCGGTTCTACGGGGCTGGGCGAACTATCA-CAGTCATGTCGTCGCCAAGAAGGTCTTCAA 957 Query 2243 CCGCATGGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGGCACCCGAA 2302 || |||||| | ||||| | ||||||||| |||||| ||| || ||||| Sbjct 956 CCAGGTGGACAGCGCAGTGTGGGAAATGCTCTGGCGATGGGCGGTACGTCGCCACCCTCG 897 Query 2303 CAAGTCAC 2310 |||| ||| Sbjct 896 CAAGACAC 889 Score = 100 bits (110), Expect = 6e-17 Identities = 138/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 740 CAGTCAG-GGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCG 798 |||| || ||||||||| || |||||||||| || || ||| | |||||| | Sbjct 2338 CAGTAAGCGGAACGTGGAAATCCCGTATCGCTCCCGTCAGGGAA----AGCCGTTTGTAA 2283 Query 799 AACTGT----TGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATC 854 || | |||||||||||| ||| || || |||||||||||| ||||||| Sbjct 2282 AAATTGCCCATGGCGGTGCGGGCGAAGGAACGAGGAAAAAGCGAACGCCGTCCTGTAATG 2223 Query 855 GTCTGGATAGGGGTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTT 914 | ||||||| ||||| |||||||| |||| |||| ||||||||| || | |||||| Sbjct 2222 GGTTGGATAGAGGTTGAAACATCACTTCACGCGAAAGCGGGCAGACGTCCTCATGGTCTC 2163 Query 915 TCGTCGCAAGA 925 || || || || Sbjct 2162 TCTTCACACGA 2152 >seq24971 Length=330 Score = 132 bits (146), Expect = 1e-26 Identities = 96/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2860 ATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAGTCCGTG 2919 |||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| Sbjct 1 ATAGCTCAGTTGGTTAGAGCAGGGGACTCATAATCCCTTGGTCGTAGGTTCGAGTCCTAC 60 Query 2920 TGGGCCCACCACCTTCAAAGCCGCGCACTGCGCGGCTTTCGCCTTTCTGGC 2970 ||||||||||| ||| ||||||||||| ||||||||||| | |||||||| Sbjct 61 TGGGCCCACCATCTTGAAAGCCGCGCATTGCGCGGCTTTGTCGTTTCTGGC 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104281833465026