Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq2516 223 4e-53 seq2261 134 2e-26 seq12517 82.4 8e-11 >seq2516 Length=21774 Score = 223 bits (246), Expect = 4e-53 Identities = 159/183 (87%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1961 TTACAGGCTTTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGA 1902 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 ||| ||||| || || || ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1901 GTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATG 1842 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 || ||| || || ||| ||||| |||||||| ||||||||||||||||| ||||| || Sbjct 1841 CTCAACCGCGTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCC 1782 Query 9741 TTC 9743 ||| Sbjct 1781 TTC 1779 >seq2261 Length=3986 Score = 134 bits (148), Expect = 2e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 9560 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 9619 |||||| ||| || |||||||| | ||||| || |||||||||| ||||| | Sbjct 688 ATTACATGGTCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGG 629 Query 9620 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 9679 ||||||| || || || || || ||||||||||||||||||||||||||||||||||| | Sbjct 628 AGTTAAAACGTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGT 569 Query 9680 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 9739 | | || || ||| |||| || || ||||| ||||||||||| ||||||| Sbjct 568 TTTCCATCGCGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCAC 509 Query 9740 CTTC 9743 |||| Sbjct 508 CTTC 505 >seq12517 Length=681 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17110 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 17169 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 67 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 126 Query 17170 TAC 17172 ||| Sbjct 127 TAC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545759367661200