Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq1494 233 3e-56 seq2100 199 6e-46 seq3094 118 2e-21 seq345 113 6e-20 >seq1494 Length=7401 Score = 233 bits (258), Expect = 3e-56 Identities = 386/551 (70%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 88180 AAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCC 88239 ||||| || || ||| | || || ||||| |||||||| ||||||| || | || Sbjct 1024 AAGCAGCTGATTTTCGCTACCGGCGAAGCTGGATGCGGCAAGACCTGGATCAGTGCGGCG 965 Query 88240 TACGCGGTAGA-GCGATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCCTGT 88298 | || | || || | | | || || || || | || ||||| || || || || Sbjct 964 AAGGCAGCTGAAGCCCTGA-TCCATAAGGATGTGGACAGAATTATTGTTACCCGTCCCGT 906 Query 88299 CCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCC 88358 || || || ||||| | |||||| | ||||| ||| | | || |||||||| || Sbjct 905 TCTGCAGGCCGACGAAGATCTCGGCTTCTTACCGGGAGATATCGCCGAGAAGTTCGCTCC 846 Query 88359 TTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGC--CGTTTCTTACAA 88416 || |||||||| |||||||||||||| | ||| | ||||| || | ||| | || Sbjct 845 CTATTTCCGACCGGTTTACGATGTGCTGGTGAAAAGGCTGGGG-GCTTCCTTTATG-CAG 788 Query 88417 TACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGC 88476 ||||||||| |||| || | |||||| || || || || |||||||||||||| || Sbjct 787 TACTGCCTGCGTCCGGAAATCGGCAAGGTGGAAATCGCGCCGTTCGCCTATATGCGCGGA 728 Query 88477 CGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGCTCAGCAG 88536 || | ||| || || ||||| || || | || || || |||||| || || ||| Sbjct 727 CGTACCTTTGAAAATGCGGTGGTGATTCTGGACGAGGCCCAGAACGTGACCGCAGCGCAA 668 Query 88537 ATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGTATCGTTATCGTTAACGGTGACGTC 88596 |||||| | || | ||||| ||||||||||| | || ||||| || || || || Sbjct 667 ATGAAGATGTTTTTAACCCGCCTCGGGGAGAACGTGACGGTCATCGTCAATGGCGATATC 608 Query 88597 ACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGCCCGTTTC 88656 || ||||||||||| || || || |||| || || ||| ||| || | || ||||| Sbjct 607 ACCCAGTGCGACTTGCCCTCTGGCGTGAGATCTGGCCTGAGCGATGCGCTGGCGCGTTTT 548 Query 88657 GAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCGCTCTCCG 88716 || |||||||| | |||||||||| ||||| || | |||||||| |||||||| | Sbjct 547 GAGGAAGACGAGATGATCGGCATCGTGCGTTTCACCACCGATGACTGCGTGCGCTCGGCC 488 Query 88717 CTTTGTCAGCG 88727 || || ||||| Sbjct 487 CTCTGCCAGCG 477 >seq2100 Length=19628 Score = 199 bits (220), Expect = 6e-46 Identities = 233/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGA 99197 ||| || |||| ||||||||| ||||| ||| || | | ||| ||| ||| | Sbjct 19061 GAGGAACCATGAAACAGTATCTTGATTTGATGCAGAAAGTGCTCACCGAGGGCACGCCAA 19120 Query 99198 AGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATC 99257 | || ||||| || || || || || | || |||||||| || ||||||||||| || | Sbjct 19121 AAAATGACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACC 19180 Query 99258 TGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACG 99317 |||| |||||||| |||||||| || || ||||||||||| | || || || || || | Sbjct 19181 TGCAGGAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATG 19240 Query 99318 AACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAA 99377 ||||||||||||||||| | ||||| ||||| || ||| | | || || || | Sbjct 19241 AACTGCTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCA 19300 Query 99378 CTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGT 99437 | || |||||||| ||| | | | |||||||||| || ||||| ||||| ||||||| Sbjct 19301 CCATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGT 19360 Query 99438 GGCGGTCTTGGCCTG 99452 |||| || ||||||| Sbjct 19361 GGCGTTCCTGGCCTG 19375 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 99569 CAGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGT 99628 || |||||||| ||| || || ||| ||||| |||||||||||||||| ||| || Sbjct 19390 CATATCGACCAGATCAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGG 19449 Query 99629 ATCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCAC 99688 |||||||| |||||||||||||| | || || || ||||||| | || ||||||||| Sbjct 19450 ATCATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCAC 19509 Query 99689 GCATTCTTCCAGTTCTAC 99706 || ||||||||||||||| Sbjct 19510 GCCTTCTTCCAGTTCTAC 19527 >seq3094 Length=9505 Score = 118 bits (130), Expect = 2e-21 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACC--C 100034 |||||| | || || || || ||||||| |||||||| || || ||| ||| | Sbjct 9505 GTCTGGACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGACCA--ACCTGC 9448 Query 100035 AGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCA 100094 || || | || | ||||||||| | || |||||| | |||||||| ||||| | || | Sbjct 9447 AGCTAAGCCGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGA 9388 Query 100095 TCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCA 100154 | ||||| || |||||||||||||| ||||||| ||||| |||||||| | || | Sbjct 9387 TTTTCGACTACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTA 9328 Query 100155 AAGCACCGGTCGCGAT 100170 |||| ||||| ||||| Sbjct 9327 AAGCGCCGGTGGCGAT 9312 >seq345 Length=175672 Score = 113 bits (124), Expect = 6e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||| || || || || | || ||||||| |||||||||| ||| ||||| Sbjct 150405 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 150464 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGCGTTCGATTATTCACGAACT 99321 | || ||||| | ||||| ||| ||| || | || || || ||||| || Sbjct 150465 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTG-CATCTCAAATCCATCATCCACGAGCT 150523 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 ||||||||||||||||||||| || || || ||| | || || || || || || || Sbjct 150524 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 150583 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 ||||| |||||| || | | ||||| ||||| ||||| || || | |||||||| Sbjct 150584 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 150643 Query 99442 GTCTTGGCCTG 99452 || ||||||| Sbjct 150644 CTCCTGGCCTG 150654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716211204633400