Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq2100 152 8e-32 seq345 129 9e-25 seq4663 93.3 7e-14 seq85 89.7 8e-13 seq347 86.0 1e-11 seq48 84.2 3e-11 >seq2100 Length=19628 Score = 152 bits (168), Expect = 8e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 202542 AAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGA 202601 ||| || ||||| |||||||| |||||| |||| | ||||| |||||||| ||| | Sbjct 19119 AAAAAATGACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAA 19178 Query 202602 CCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCA 202661 |||| ||||||||||| ||||||||||| || ||| | || || ||||| || Sbjct 19179 CCTGCAGGAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCA 19238 Query 202662 CGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGT 202721 || ||||||||||||||| | || |||||||||||| || ||| |||| ||| || Sbjct 19239 TGAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGT 19298 Query 202722 CACTATCTGGGACGAATGGGCG 202743 ||| ||||||||||| |||||| Sbjct 19299 CACCATCTGGGACGAGTGGGCG 19320 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 202953 TGGCGAACTCGGCCCAGTATACGGAAAACAGTGGCGGGATTGGGTTGGTGCAGATGGTCG 203012 |||||| || || || || ||||| ||||||||||| ||| || | ||||| || Sbjct 19329 TGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGTTCCTGGCCTGCGCCGGATGGCCG 19388 Query 203013 GCATCATGACCAAATCACCAAAGTCATCGACCAGCTGCGTAACGATCCGGATAACCGCCG 203072 ||| ||||| |||| || || || |||||||| ||||| ||||| |||||| Sbjct 19389 CCATATCGACCAGATCAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCG 19448 Query 203073 CATTATTGTCAGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCA 203132 || || ||| |||||||| ||||| ||| |||| | |||||| | || ||||| || Sbjct 19449 GATCATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCA 19508 Query 203133 TTCTTTCTTCCAGTTCTA 203150 | |||||||||||||| Sbjct 19509 CGCCTTCTTCCAGTTCTA 19526 >seq345 Length=175672 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||| || ||| | ||||| ||||||||| || || ||| | Sbjct 150405 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 150464 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || |||| || || || | || ||| || ||||| ||||||||| Sbjct 150465 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 150524 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||||||||| || || |||||| || || || || ||||| || || ||| Sbjct 150525 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 150584 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 150585 TGGGATGAATGGGC 150598 >seq4663 Length=4578 Score = 93.3 bits (102), Expect = 7e-14 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 2617 AATTTTAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGT 2676 |||||||||| ||||||||||||||||||| |||||||||||||||| |||||| || Sbjct 4516 AATTTTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGT 4457 Query 2677 TCGAGTC-CTCTCTTCCCTGCCA 2698 ||||||| ||| | |||||||| Sbjct 4456 TCGAGTCTCTC-CGCCCCTGCCA 4435 >seq85 Length=367292 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 38224 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 38165 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 38164 TCACTCGCGCCA 38153 >seq347 Length=20085 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2622 TAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAG 2681 ||||| ||||| ||| ||||||||||| ||||||||||||||| || | |||||||| Sbjct 16292 TAGGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAA 16233 Query 2682 TCCTCTCTTCCCTGCCA 2698 |||| ||| |||||||| Sbjct 16232 TCCTGTCTCCCCTGCCA 16216 >seq48 Length=607718 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 108176 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 108235 Query 2771 C 2771 | Sbjct 108236 C 108236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 110292 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 110351 Query 2771 C 2771 | Sbjct 110352 C 110352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788041851142000