Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq1687 132 1e-26 seq40 111 4e-20 seq501 100 8e-17 seq62 86.0 2e-12 >seq1687 Length=800 Score = 132 bits (146), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 506 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 565 Query 6760 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 6798 ||||||||| |||||||| ||| |||| | | || | || Sbjct 566 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 625 Query 6799 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 6858 |||| ||||||| ||| || || ||||| || | ||| |||| | |||||| |||||| Sbjct 626 CTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGT 685 Query 6859 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 6914 | ||| |||| || || || || || |||| || | || |||| | ||||| ||| Sbjct 686 TAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq40 Length=14228 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2857 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 2916 Query 32812 TTAC 32815 |||| Sbjct 2917 TTAC 2920 Score = 111 bits (122), Expect = 4e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 216 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 275 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 10187 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 10246 Query 276 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 335 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 10247 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 10306 Query 336 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 395 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 10307 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 10366 Query 396 CACTGGCATGGCGCCAACCAAATGTTCTACCGCCAAAAACG 436 || || || ||| | ||| |||||| | || |||| || Sbjct 10367 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 10407 >seq501 Length=12468 Score = 100 bits (110), Expect = 8e-17 Identities = 145/202 (72%), Gaps = 16/202 (8%) Strand=Plus/Minus Query 30663 CGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAA--ATCAAATACTTATGTAT 30720 || ||||| |||||||| |||| | | ||| |||| ||||| |||||| | Sbjct 11069 CGTAGGTCACAGGTTCGAATCCTGTAGGGCGTGCCATTTAATAATCAATCACTTATCAAC 11010 Query 30721 TATTCGTGCCTTC-CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAG 30768 | || | | || || |||||| || ||||||||||||||||||| || Sbjct 11009 T--TCCTCCAGTCGCTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAAT 10952 Query 30769 TACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAG 30828 | ||||||| ||||||||||| || || || ||||| | || || |||||||| |||| Sbjct 10951 TTGCAAAAATTGAGTCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAG 10892 Query 30829 CATATCGGCGAACCATTTCGAT 30850 ||||||| || ||||||||||| Sbjct 10891 CATATCGACGGACCATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 30653 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 30704 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133622395339354