Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2261 179 4e-40 seq501 132 5e-26 seq2516 131 2e-25 seq1200 87.8 2e-12 seq46 86.0 7e-12 >seq2261 Length=3986 Score = 179 bits (198), Expect = 4e-40 Identities = 152/187 (81%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 52705 AACTACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGG 52764 || ||||| | | ||| || ||||| | ||| ||||| |||| ||||||||||||||| Sbjct 689 AATTACATGGTCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGG 630 Query 52765 GAGTTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGG 52824 |||||||| || || || || ||||| |||||||| |||| ||| || |||||| ||| Sbjct 629 GAGTTAAAACGTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGG 570 Query 52825 TCTTCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCG 52884 | ||||||||| || |||| |||||| || ||||| ||||| ||||||||||||||||| Sbjct 569 TTTTCCATCGCGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCA 510 Query 52885 CCTTCGA 52891 ||||||| Sbjct 509 CCTTCGA 503 >seq501 Length=12468 Score = 132 bits (146), Expect = 5e-26 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 66397 ATAAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCT 66456 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11028 ATTAAATGGCACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCT 11087 Query 66457 CTATCCAGCTGAGCTAAG 66474 |||||||||||||||||| Sbjct 11088 CTATCCAGCTGAGCTAAG 11105 >seq2516 Length=21774 Score = 131 bits (144), Expect = 2e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||| ||||| ||||| | ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 1952 TTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCG 1893 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || || || || |||||||| || |||| ||| || |||||| || | || | ||| Sbjct 1892 TACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGC 1833 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || |||| |||| ||| || |||||||||||||||||||||||||||||||| || Sbjct 1832 GTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGACGCG 1773 >seq1200 Length=6265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||| ||||| ||||| ||||||||| |||| | ||||||||||| | |||||||| Sbjct 5092 AATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTAT 5033 Query 66461 CCAGCTGAGCTAAGAGTGCATTA 66483 |||||||||||| | | || ||| Sbjct 5032 CCAGCTGAGCTACGGGCGCCTTA 5010 >seq46 Length=971285 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 66402 ATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 66461 ||||| ||||| |||||||||||||||||||||| | ||| | ||| | |||||||| Sbjct 627750 ATGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTATC 627691 Query 66462 CAGCTGAGCTAAGAGTGCAT 66481 ||||||||||| | |||||| Sbjct 627690 CAGCTGAGCTACGGGTGCAT 627671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521930978178120