Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq1494 223 5e-53 seq2100 163 4e-35 seq3094 111 2e-19 seq345 100 4e-16 >seq1494 Length=7401 Score = 223 bits (246), Expect = 5e-53 Identities = 372/535 (70%), Gaps = 2/535 (0%) Strand=Plus/Minus Query 88095 CCCTATTGAGGCCCGCAATGAAAACCAGCAGCAATACATGAATGCGCTGGAAACCAAACA 88154 ||| |||||||| |||||||| ||| ||| || ||||||| | || | || || Sbjct 1079 CCCAATTGAGGCGCGCAATGAGGCTCAGGCGCATTATTTGAATGCCATCGACAATAAGCA 1020 Query 88155 ACTGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGC 88214 ||||| ||||| ||||| ||||| || ||||| || || | | | || || | || Sbjct 1019 GCTGATTTTCGCTACCGGCGAAGCTGGATGCGGCAAGACCTGGATCAGTGCGGCGAAGGC 960 Query 88215 TGCCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTC 88274 || ||| || | || || | ||| | || ||||| |||||||| || || Sbjct 959 AGCTGAAGCCCTGATCCATAAGGATGTGGACAGAATTATTGTTACCCGTCCCGTTCTGCA 900 Query 88275 TGCAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTT 88334 || || ||||| || |||||||| || || || || | ||||||||||| || || || Sbjct 899 GGCCGACGAAGATCTCGGCTTCTTACCGGGAGATATCGCCGAGAAGTTCGCTCCCTATTT 840 Query 88335 CCGTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTACGCTACTGTTT 88394 ||| || || ||||| ||||| ||| | | || | | || | | ||||| | Sbjct 839 CCGACCGGTTTACGATGTGCTGGTGAAAAGGCTGGGGGCTTCCTTTATGCAGTACTGCCT 780 Query 88395 AAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCTT 88454 |||| ||| | |||||| || || || || |||||||| ||||||||||||| ||| Sbjct 779 GCGTCCGGAAATCGGCAAGGTGGAAATCGCGCCGTTCGCCTATATGCGCGGACGTACCTT 720 Query 88455 TGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTGCTCAGCAGATGAAGCT 88514 ||||||||| || | | | || || || |||||| || || ||| |||||| | Sbjct 719 TGAAAATGCGGTGGTGATTCTGGACGAGGCCCAGAACGTGACCGCAGCGCAAATGAAGAT 660 Query 88515 CTTCCTGACACGTATCGGGGAGAACTGTCTCG-TGATTGTCAATGGCGATATTACTCAGT 88573 || | || || ||||||||||| || || | || |||||||||||||| || |||| Sbjct 659 GTTTTTAACCCGCCTCGGGGAGAAC-GTGACGGTCATCGTCAATGGCGATATCACCCAGT 601 Query 88574 GCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGA 88628 ||||||| || || || | ||||| ||| ||||||||| |||||||||| Sbjct 600 GCGACTTGCCCTCTGGCGTGAGATCTGGCCTGAGCGATGCGCTGGCGCGTTTTGA 546 >seq2100 Length=19628 Score = 163 bits (180), Expect = 4e-35 Identities = 185/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 ||||| || |||||||| ||| | || | || || ||||| ||||||||||| || Sbjct 19126 GACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACCTGCAG 19185 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644 ||||| || || ||||| || || ||||||||||| | || || || || |||||||| Sbjct 19186 GAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATGAACTG 19245 Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 || ||||||||| | || || ||||| | | || ||| | || ||| |||||| ||| Sbjct 19246 CTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCACCATC 19305 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 ||| | ||||||| | ||||| || ||| | || ||||| ||||| || |||||||| Sbjct 19306 TGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGT 19365 Query 99765 TCTTGGCC 99772 || ||||| Sbjct 19366 TCCTGGCC 19373 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99894 ATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATT 99953 || ||||| ||| || ||| || ||||| ||||||||||||| || ||| || || Sbjct 19393 ATCGACCAGATCAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGGATC 19452 Query 99954 ATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCG 100013 || ||| ||||||||||| | ||| || || | ||||| | ||||| ||||| || Sbjct 19453 ATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCC 19512 Query 100014 TTCTTCCAGTTCTAC 100028 ||||||||||||||| Sbjct 19513 TTCTTCCAGTTCTAC 19527 >seq3094 Length=9505 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 100290 GTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT-CA 100348 |||||||| || || || || ||||| ||||||||| || ||||| | || || Sbjct 9505 GTCTGGACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGAC-CAACCTGCA 9447 Query 100349 GCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCTAT 100408 |||| | ||| ||||| | | || || |||| ||||| || ||||| | || || Sbjct 9446 GCTAAGCCGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGAT 9387 Query 100409 CTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCATTAA 100468 |||||||| |||||||||||||||||||| | ||||| || | || | |||||| Sbjct 9386 TTTCGACTACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAA 9327 Query 100469 AGCGCCGGTGGCGAT 100483 ||||||||||||||| Sbjct 9326 AGCGCCGGTGGCGAT 9312 >seq345 Length=175672 Score = 100 bits (110), Expect = 4e-16 Identities = 175/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 ||||||||||| || || || || || | || || | || ||||| || || || Sbjct 150402 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 150461 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGA 99640 | | ||||||||| | || || ||| ||| || ||| || || || || || Sbjct 150462 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTG-CATCTCAAATCCATCATCCACGA 150520 Query 99641 ACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCAC 99700 || || |||||||||||||| || || || | | || || || || |||||||| || Sbjct 150521 GCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGAC 150580 Query 99701 TATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTG 99760 |||||| |||| |||| |||||||||| || | || ||||| || || | ||||| Sbjct 150581 GATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTG 150640 Query 99761 GCGGTCTTGGCC 99772 ||| || ||||| Sbjct 150641 GCGCTCCTGGCC 150652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734016120174120