Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq360 179 1e-40 seq11225 113 1e-20 seq76 111 4e-20 seq12700 104 6e-18 seq97 98.7 3e-16 seq4750 87.8 5e-13 >seq360 Length=29890 Score = 179 bits (198), Expect = 1e-40 Identities = 354/519 (68%), Gaps = 41/519 (8%) Strand=Plus/Plus Query 26728 TTAAAACGGGATATCGTCATCAAAATCCATCGGCGGTTCGTTGCCTGCACCCTGCGCCGG 26787 ||| |||||||| ||||| || || |||||||||||||||||| | | |||| ||| Sbjct 27059 TTAGAACGGGATGTCGTCGTCGAAGTCCATCGGCGGTTCGTTGGAAGG-CGCTGC--CGG 27115 Query 26788 TGGTCTTTGCTGCTGTGGTCGAGACTGCGCGCCACCACTGAACTG--------------- 26832 || || ||||||| || || ||||||||||| || |||||||| Sbjct 27116 -GGCCT--GCTGCTGCGGACGGGACTGCGCGCCGCCGCTGAACTGGTTGCCGCCCTGCGG 27172 Query 26833 ---CTGTTGCTGGCC---ACCACCTGACTGCTGGCCACCGGCCTGACGGTTATCGT---- 26882 ||| |||| || ||| || ||||||||| ||| |||| |||| | Sbjct 27173 CTGCTGCGGCTGACCCCAACCGCCCTGCTGCTGGCCGCCG-CCTGCCGGTGCGCCGCCGC 27231 Query 26883 --TGGCGGATGAC-AGCATAAGCATACGGCCATTCATGCCCACGTTGATTTCAGTGGTGT 26939 || ||| | | ||||| |||| ||| || | ||| | ||| ||||||| Sbjct 27232 CCTGACGGCCGCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACTTCGGTGGTGT 27291 Query 26940 A---GCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGA 26996 | | || | || ||| ||| ||||| || ||||| ||||| |||||||||| Sbjct 27292 ATTTGTCCTGACCGGATTG---ATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGT 27348 Query 26997 ACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGA 27056 |||||| |||||| ||||| || |||||||||| ||||||||| |||||||| | | Sbjct 27349 ACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCA 27408 Query 27057 CAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTT 27116 ||||||||||||| || ||||||||||| |||||| || ||| || ||| || Sbjct 27409 CAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGCCAGGATT 27468 Query 27117 CGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTG 27176 ||| || || | ||| ||||| || ||||| || ||||||||||| ||||| | Sbjct 27469 CGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCGTACTTCCG 27528 Query 27177 GATCGTTGCCTAAATTACCGATTAACTGCACCTGGTTTA 27215 | || | || | |||||||| | ||||| ||||| Sbjct 27529 GGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTTA 27567 >seq11225 Length=5908 Score = 113 bits (124), Expect = 1e-20 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 26906 CGGCCATTCAT---GCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCA 26962 |||||||||| | | ||| ||| || ||||||||||| | || || | | || Sbjct 4999 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTC- 5057 Query 26963 GTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAT 27022 ||| | ||||| || ||| |||||| | | | || ||| ||||| ||||| || Sbjct 5058 --CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 5115 Query 27023 TCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCT 27082 ||||| |||||||| || | ||||||||||| || ||||||||||| || || |||| Sbjct 5116 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 5175 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | | | ||| || |||||||||||| ||||| | ||||| | | | | || | Sbjct 5176 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 5235 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCG 27181 || ||| || ||| ||||||| ||||| || ||| Sbjct 5236 ACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCG 5274 >seq76 Length=48202 Score = 111 bits (122), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || || || ||| | |||| ||| |||||||| |||||||||| Sbjct 1585 TACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCACCAG 1526 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||||||||||||||||||||| | Sbjct 1525 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTGCTCCCGCATCT 1466 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | || || || || ||| |||| | |||||| | ||| || || || |||||| Sbjct 1465 CCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCA-CCTGCAGGTTTGCCACTGCG 1407 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| ||||| Sbjct 1406 CCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 1369 >seq12700 Length=2524 Score = 104 bits (114), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 |||||| ||| | |||| |||||||||||||||||||| ||||| || || | ||| Sbjct 392 GCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTT 333 Query 27046 GCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT----CTTTTGGTTCGCCTGTGGCC 27100 |||||| || |||| | ||||||||||| || | || ||| || ||| || | Sbjct 332 GCCGAACATCGACA-CACGGTGCCATTCGGTTTTCTCGACCTTCTG----GCCGGTTTGC 278 Query 27101 TTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGC 27160 || || |||||| |||| | || || | || || |||| || ||| ||| |||| Sbjct 277 TTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTCGGC 218 Query 27161 ATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 | |||||| ||||| ||||| | ||| | |||||| Sbjct 217 AAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGA 181 >seq97 Length=44549 Score = 98.7 bits (108), Expect = 3e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || ||||| ||| | |||| ||| |||||||| ||||| |||| Sbjct 4965 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 4906 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||| |||||||| |||||||| | Sbjct 4905 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 4846 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | ||||| || || ||| |||| | ||||| | ||| || || || |||||| Sbjct 4845 CCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGA-CCTGCAGGTTTGCCACTGCG 4787 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| || || Sbjct 4786 CCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 4749 >seq4750 Length=4641 Score = 87.8 bits (96), Expect = 5e-13 Identities = 190/282 (67%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 26901 GCATACGGCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGAT 26960 |||| | ||| | |||| | ||| | ||||| |||||||| || | | || | | | Sbjct 4301 GCATTCTGCCCTGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTT 4242 Query 26961 CAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGT 27020 | ||| | || ||| | || ||||| ||| | |||| ||||| ||||| | Sbjct 4241 C---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGAT 4185 Query 27021 ATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCT 27080 | |||||||||||||| || | || || || | ||| ||||||||||| |||| | Sbjct 4184 ACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTT 4125 Query 27081 C--TTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATT 27138 | ||| || | | || ||| || |||||| || |||| |||| ||||||||| Sbjct 4124 CGACTTTCTGTCCCGTTTG--CTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATT 4067 Query 27139 GGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATC 27180 || ||||| ||| ||| | |||||| ||||||||| Sbjct 4066 GGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATC 4025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133971078423120