Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq3869 196 6e-45 seq2516 147 3e-30 seq2100 118 1e-21 seq2053 87.8 2e-12 seq272 87.8 2e-12 seq345 86.0 7e-12 >seq3869 Length=8584 Score = 196 bits (216), Expect = 6e-45 Identities = 1043/1646 (63%), Gaps = 85/1646 (5%) Strand=Plus/Minus Query 43393 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 43452 ||| | || ||||| || ||| | || |||||||| || || |||||||| | ||| Sbjct 4766 TCGCTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC 4707 Query 43453 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 43509 || |||| || | || || |||| ||| | || || ||||| ||||| Sbjct 4706 GTGCTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCC---ACCTCCAGCGCGATT 4650 Query 43510 GTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 43569 ||||| || |||| || ||||| || ||||| | || || || | ||||||||| || Sbjct 4649 GTGAAATACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGCGCGCTG 4590 Query 43570 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 43629 || ||||| || || ||||| | || || ||| || ||||||| || ||| Sbjct 4589 GGCAGCCCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTACAAGCAT 4530 Query 43630 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 43689 | ||||| ||||| |||||||| || || || ||||| || || || || ||||| | Sbjct 4529 TTCCAGACCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCAACCCTC 4470 Query 43690 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 43749 | || || || |||||| ||||||| |||| ||||||||| |||||||||||| ||| Sbjct 4469 TTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAACCGTGGT 4410 Query 43750 GTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 43809 || ||||| |||||||| |||| || || || ||| | ||| | ||||||| Sbjct 4409 ACCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTGATGTAC 4350 Query 43810 AAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCT---GACGTTGCAAATGAT 43866 | ||| | | || || | || || |||||||||||| ||||| | Sbjct 4349 ACCCGTCTGCTGAAGGGCGGCGATATTACCCTGTTCAGCCCTTCCGACGTCCC------G 4296 Query 43867 CGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGT 43926 |||||||||| || |||| || || |||||| ||||| || || || ||| Sbjct 4295 GGCCTGTATGACGCCTTCT-TC--GCCGATCAGGACGAGTTTGAGCGCCTGTACACCCAG 4239 Query 43927 TTGGAAAAAGACCCAACGGTACGCAAGAAACGTATTAAAGCAGCAGATTTGTTCCAGTTG 43986 | || | ||| | | || ||| | ||||||||||| | || ||||| | || Sbjct 4238 TACGAGCAGGACGACAGCATTCGTAAGCAGCGTATTAAAGCCGTTGAGCTGTTCTCGCTG 4179 Query 43987 CTTGTTCAGGAACGCGCACAGACCGGACGCAAATATATTTTCAACAGTC-ACCACGTCAA 44045 | | ||||| ||||| ||||| |||| ||||| ||| ||| ||||| ||| Sbjct 4178 ATGATGCAGGAGCGCGCCTCTACCGGCCGCATCTATATCCAGAAC-GTCGACCACTGCAA 4120 Query 44046 CCAGCAGGGCAGTTTC--TCCGTT-------CCTGTTCGTATGTCGAACCTTTGCTGTGA 44096 | || || ||| |||| | || || ||| ||| ||||| ||| || Sbjct 4119 CACCCACAGCCCGTTCGATCCGGTAGTCGCCCCGGTGCGTCAGTCTAACCTGTGCCTGGA 4060 Query 44097 AATTGCGATCCCAACGTCACCTCTGGATGATGACGACAAGTTAGCAGGTGAAATCGGACT 44156 ||||| | || || ||| ||||| |||| | || | | || ||||||| || Sbjct 4059 GATTGCTCTGCCGACCAAACCGCTGGAAGATGTCAACGACGAAAACGGCGAAATCGCGCT 4000 Query 44157 GTGTACGCTTATGGCTATCGTTCTC---GATAACGCTGATGTAAGCGAATTCCCAGCCCT 44213 ||| || || ||| || ||| | || || | ||| | || || Sbjct 3999 GTGCACCCTGTCGGCCTTCAACCTCGGGGCTATCGACAGCCTCGACGAGCTGGAAGAGCT 3940 Query 44214 TACACGTATTGCAGTACGCGCACTGGATAACCTGTTGGATTACCAGAACTACCCTGTTGC 44273 || | || || || || |||||| ||| | || || ||| | ||||| | | Sbjct 3939 GGCAGTGCTGGCGGTGCGTGCTCTGGATGCGCTGCTCGACTATCAGGATTACCCCATCCC 3880 Query 44274 GGCGGCTCTGAAA------GCTAAACAGCGTCGTTCTCTGGGCGTTGGTATCACCAACTA 44327 ||||||| ||| || | ||||||| | ||||| | || | | ||||| Sbjct 3879 GGCGGCT---AAACGCGGCGCGATGGGGCGTCGTACGCTGGGTATCGGCGTGATCAACTT 3823 Query 44328 TGCTTCGTGGTTGGCAAGTAACTATTGCGA---CTACTCAGAAGCATACGCCGGAAACGT 44384 |||| | |||| || || || | |||||| || | |||| ||| | Sbjct 3822 CGCTTACTATCTGGC---GAAGCATGGCAAACGCTACTCCGACGGCAGCGCCAACAACCT 3766 Query 44385 ---TCATGAACTGATGGAAGCGTTTCAATATAACCTGTTGGTTGCCTCTATGGAACTGGC 44441 || || | | |||||| |||| || | ||| || ||||||| || ||||| Sbjct 3765 GACGCACAAAACGTTCGAAGCGATTCAGTACTATCTGCTGAAGGCCTCTAACGAGCTGGC 3706 Query 44442 GAAAGAACGCGGTGCATGTGGACTGTTCCATGAAACAAAATATGCACAAGGGCTGTTACC 44501 | || | || || || |||| | ||||| | ||||| || || | | || Sbjct 3705 TATCGAGCAAGGCGCCTGCCCGTGGTTCAACGAAACCACCTATGCGCAGGGCATCCTGCC 3646 Query 44502 GATCGATTGGTACTGCAAAACCGTGGATGAACTC----GCGTTACCTGTGTATAATTGCG 44557 ||||||| || ||| |||| | || ||| ||| || | | || Sbjct 3645 GATCGATACCTATAAGAAAGATCTGGACGGCATCGTCAGCG-AACCCCTG---CACTACG 3590 Query 44558 ATTGGGAATGGTTGCGCGGCGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCCG 44617 | |||||| ||||||| || |||| | ||| |||| |||||||| || |||| Sbjct 3589 ACTGGGAAGCATTGCGCGAGTCCATTAAAACTCACGGCCTGCGCAACTCAACGCTCTCCG 3530 Query 44618 CTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACCGC 44677 | | ||||| | |||| || || | |||| | || ||||| ||||| |||| Sbjct 3529 CACTGATGCCGTCCGAGACCTCGTCGCAGATCTCCAACGCCACCAACGGCATTGAGCCGC 3470 Query 44678 CTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTACCG 44736 | ||||| | |||||| | ||| | || || || ||| || | | |||||| || ||| Sbjct 3469 CGCGCGGCCACGTGAGTATCAAAGCGTCCAAGGACGGTATCCTGC-GCCAGGTGGTGCCG 3411 Query 44737 ---AACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 44793 || | ||| |||| | ||| || || ||| ||| | || Sbjct 3410 GATTACGAAAACCTGCAGA---ACGCCTACGAGCTGCTGTGGGAGATGCCGAA------C 3360 Query 44794 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 44853 || | ||||||||| | || | | | |||||||||||| | || || |||||||| Sbjct 3359 AACGACGGTTATCTGCAGCTGGTGGGTATCATGCAGAAGTTTATCGACCAGTCGATCTCT 3300 Query 44854 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 44913 || ||||| ||||| |||||| | |||||| || |||||| | | | || | Sbjct 3299 GCCAACACTAACTACGATCCGACGCGCTTCCCGTCCGGAAAAGTG----CCG-ATGCAGC 3245 Query 44914 A-TTG----ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACA 44968 | ||| | |||||||| | || | | | |||||| ||||| ||||| ||||||| Sbjct 3244 AGTTGCTCAAAGACCTGCTCAACGCCTATAAATTCGGCGTCAAAACGCTGTACTATCACA 3185 Query 44969 ACACCCGCGACGGTGCAGGTGAAGAC 44994 ||||||| || || || ||||||| Sbjct 3184 ACACCCGTGATGGCGC---TGAAGAC 3162 >seq2516 Length=21774 Score = 147 bits (162), Expect = 3e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475 || ||||| || |||||||| ||||| || ||||| ||||||||||||||| || || Sbjct 1776 GTCGAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCG 1835 Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535 || | ||||| || || || || ||| | || || || ||||| || || || || ||| Sbjct 1836 GTTGAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGC 1895 Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 53595 || || | ||||| || ||||| ||||||||||| |||||| | |||||||| |||||| Sbjct 1896 TTCAACTCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGC 1955 Query 53596 ATGTAA 53601 ||||| Sbjct 1956 CTGTAA 1961 >seq2100 Length=19628 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42258 GACCAGATT-GCTCGGATCGTCAACGAACTGAAAACCACACCAGACGATCGCGGGATCAT 42316 |||||||| || ||| | | ||| | ||||||| | || ||| ||| ||||||| Sbjct 19396 GACCAGATCAGCACGG-TGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGGATCAT 19454 Query 42317 CGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTT 42376 ||| || ||||||||| | || |||||||||||||| || ||||| ||| || Sbjct 19455 CGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTT 19514 Query 42377 CTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGA 42436 |||||||||| ||| | |||| || || || ||| |||||||||||| || Sbjct 19515 CTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCGA 19574 Query 42437 TGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATAT 42490 ||| ||| | || ||||||||||||||||| ||| || || ||| |||||| Sbjct 19575 TGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq2053 Length=29219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 105030 GTATGGTTTTTAACCAGATGTAAACTATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTC 105089 ||||| ||||||| || | | |||||||||||||||||||||||||||||||||||||| Sbjct 12551 GTATGTTTTTTAATCA-ACGCTAACTATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTC 12609 Query 105090 GCTCG 105094 ||||| Sbjct 12610 GCTCG 12614 >seq272 Length=21754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475 || || || |||||||| || ||||| ||||| || || |||| ||| ||||| Sbjct 8036 GTGGAGGGGGGACAGCATCTCAACGTCAATGTACTGAACCGGGAAAAGCTGCTCGATGCG 8095 Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535 | |||| || ||| |||| || | | ||||||||||| || || ||||| || ||| Sbjct 8096 ATAGAACACCCGGAGCAGTATCCGAATCTGACGATCCGCGTCTCCGGCTATGCGGTCCGC 8155 Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTAC 53588 ||||| || ||||| | || || |||| || || ||| || |||| || || Sbjct 8156 TTTAACGCGCTGACCCGCGAGCAGCAGCAGGATGTGATCTCCCGAACGTTCAC 8208 >seq345 Length=175672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 42305 TCGCGGGATC--ATCGTTTCCGCATGGAACCCTGTTGATC-TGGATAAAATGGCATTGCG 42361 |||||| || ||||||||||||||||| || | | || | ||| ||||||| ||| Sbjct 150720 TCGCGGCGTCTGATCGTTTCCGCATGGAATCC-GGCGCTCGTCGATGAAATGGCGCTGCC 150778 Query 42362 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 42421 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 150779 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 150838 Query 42422 TCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 42481 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 150839 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 150898 Query 42482 GAC 42484 ||| Sbjct 150899 GAC 150901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576369363494680