Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq2100 196 3e-45 seq18850 134 8e-27 seq345 131 1e-25 seq7636 102 5e-17 >seq2100 Length=19628 Score = 196 bits (216), Expect = 3e-45 Identities = 363/526 (69%), Gaps = 10/526 (2%) Strand=Plus/Plus Query 821 GGCAAGTCGAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTG 880 |||| | | || |||| ||||||||||| |||||| | || |||||| ||| || Sbjct 19111 GGCACGCCAAAAAATGACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATG 19170 Query 881 CGGTACGACCTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCG 940 || | |||| || |||||||||||||| ||||| |||||| || || || Sbjct 19171 CGTTTTAACCTGCAGGAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCC 19230 Query 941 GTTGCGTACGAACTTCTGTGGTTCCT-CAGTGGCGACACGAACGTGAAGGCGCTCAACGA 999 | | ||||| ||||||||||| ||| |||||||| ||| | || |||| Sbjct 19231 ATCATCCATGAACTGCTGTGGTTCCTGCAG-GGCGACACCAACATCGCCTATCTGCACGA 19289 Query 1000 CAACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTA 1059 ||| |||||||||||||||||||||||| || | || |||| || || ||||| Sbjct 19290 GAACAACGTCACCATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTA 19349 Query 1060 CGGCGCGCAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGAT 1119 |||| |||||||| ||||| || | |||| | || | | || |||||||| Sbjct 19350 CGGCAAACAGTGGCGTTCCTGGCCTGC----GCCGGATGGCCGCCAT--ATCGACCAGAT 19403 Query 1120 CTCGGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGC 1179 | | | || | | ||| | ||||| ||||| ||||||| | | || || || Sbjct 19404 CAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGGATCATCGTCTCGGC 19463 Query 1180 ATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCT 1239 |||||||||||| || || | ||||| || ||||||||| | | |||||| | Sbjct 19464 ATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTT 19523 Query 1240 GTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCC 1298 ||||||| ||||||| |||||| ||| ||| | || ||||| | || |||||| Sbjct 19524 CTACGTCGCCGACGGCAAGCTCTC-CTGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCC 19582 Query 1299 TCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACAT 1344 |||| ||||||||||||||||| || ||||| || | ||| || Sbjct 19583 TCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq18850 Length=281 Score = 134 bits (148), Expect = 8e-27 Identities = 137/175 (78%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 904 CCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTT 963 ||| || ||||||| |||||||| ||||||||||| | |||||||| || || ||||| Sbjct 1 CCCCCTCATCACCACCAAGCGCGTGCACTTCAAATCCATCGCGTACGAGCTCCTCTGGTT 60 Query 964 CCT-CAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACG 1022 ||| ||| || || | ||||| | |||| ||| ||||| ||||| |||||||||| Sbjct 61 CCTGCAG-GGTGATTCCAACGTCGGGTGGCTCCGCGAGAACGGGGTCACGATCTGGGACG 119 Query 1023 AGTGGGCCGACG---CCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCG 1074 |||||||||| | |||||| ||||||| || |||||||| | ||||||||| Sbjct 120 AGTGGGCCGATGAATCCGGCG---ACCTCGGCCCGGTCTACGGGGTGCAGTGGCG 171 >seq345 Length=175672 Score = 131 bits (144), Expect = 1e-25 Identities = 342/505 (68%), Gaps = 30/505 (6%) Strand=Plus/Plus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||| | ||||| |||||| | ||||| || ||||||| Sbjct 150517 ACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCG 150576 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 | || |||||||| || |||||||||| ||| | ||||| || ||||| ||| | Sbjct 150577 TGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATC 150636 Query 1068 AGTGGCGGCACTGGCATGT---CGA-GGACGGAGGATCG-TCGTGGATTGACCAGATCTC 1122 ||||||| ||||| || ||| || ||| |||| || ||||| | ||||| Sbjct 150637 AGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCA--GATTG--CGAATCTC 150692 Query 1123 GGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATG 1182 | | | || || | |||| | ||||| || | || |||||||| Sbjct 150693 GTCAGT------GCGATAAAGCAAAATCCCT-ATTCGCGGCGTCTGATCGTTTCCGCATG 150745 Query 1183 GAA--CGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 ||| || || | | || || ||||| || | || |||||| | |||||||| | Sbjct 150746 GAATCCGGCGCT--CGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTC 150803 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCT 1299 ||||| | |||||| ||| || |||| || ||||||||||| ||| || || || || Sbjct 150804 TACGTGGCCGACGGAAAGCTTTC-CTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCT 150862 Query 1300 CGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGC 1359 ||| ||||||||||||||||| || || || || || | | |||| | |||||| | Sbjct 150863 CGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCAGGTCAC 150922 Query 1360 CGGCCTGCGGGTGGGTGAGCT-GATCTGGACCGGC--GGCGACTGC-CACATCTACAACA 1415 || |||| | |||||| | | || || || ||||| ||| || |||| || Sbjct 150923 GGGTCTGCAGCCGGGTGATTTCGTTC---ACACGCTGGGCGA-TGCGCATCTCTATGCCA 150978 Query 1416 ACCACGTCGACCAGGCGCTGATGCA 1440 |||| |||| ||||||| | |||| Sbjct 150979 ACCATTTCGAGCAGGCGCGGCTGCA 151003 >seq7636 Length=2863 Score = 102 bits (112), Expect = 5e-17 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||||||||||||||| | | ||| | | ||| | ||| | | Sbjct 2256 AAGGGCGACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGC 2197 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 | |||| |||||||||||| | ||||| ||| | ||||||||| | || | Sbjct 2196 TTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAAT 2137 Query 950 GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTC 1009 ||| | | ||| | | |||||| |||| ||| | ||| ||| ||||| || ||||| Sbjct 2136 GAATTGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTG 2077 Query 1010 ACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAG 1069 ||||||||||| |||||| || | ||| |||| || || || ||||||| |||| Sbjct 2076 CGTATCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAG 2017 Query 1070 TGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 ||| | || ||||| | ||||||| || Sbjct 2016 TGGACCGC-CTGGCCCACCAAGGACGGCGG 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296029325962527