Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq26023 268 3e-67 seq25528 232 2e-56 seq10590 127 7e-25 >seq26023 Length=543 Score = 268 bits (296), Expect = 3e-67 Identities = 381/536 (71%), Gaps = 0/536 (0%) Strand=Plus/Minus Query 39660 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCAC 39719 ||||||||||||||||||||||| |||||||||||||| | | || ||| ||||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 39720 TGGGGGTAGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGG 39779 |||||||| ||||||| ||| || |||||| |||| | | ||| | | Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGCTCGCGGCGCATGATCGGAATG 417 Query 39780 TGATCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGG 39839 |||| | ||| ||| ||||||||||| ||||| ||||| |||||| ||| || Sbjct 416 ATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGC 357 Query 39840 ACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCG 39899 || |||||||| || ||||| ||||| |||| ||||| || || || ||||| Sbjct 356 TTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCG 297 Query 39900 TACAGCCCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCC 39959 ||| | || ||||| ||| || | ||| | |||||| | | || ||| ||||| Sbjct 296 ATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCG 237 Query 39960 TCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 40019 || |||||||| |||||||||||| | ||| ||||||||| || ||| || Sbjct 236 TCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCCCC 177 Query 40020 ACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATC 40079 | ||| || | | ||||| || | |||||||||| ||| | | ||||||| Sbjct 176 ATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGATC 117 Query 40080 CGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTG 40139 ||| | || ||||||| ||||| || | ||||||||||| |||||||| | Sbjct 116 GTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGTCG 57 Query 40140 ATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACAC 40195 || || ||||| || ||||||||||||||||||| ||| | |||||||||||| || Sbjct 56 ATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq25528 Length=831 Score = 232 bits (256), Expect = 2e-56 Identities = 540/795 (68%), Gaps = 51/795 (6%) Strand=Plus/Minus Query 40492 CCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATGAGGTCGGT----GTGCTCGAAC 40547 ||||||| | || |||||||| |||||||| |||||| || || ||| | |||| Sbjct 765 CCTCGGTCTCGCCGTCGGGCACAGGGAAGCGCGGCATGTAGTTGGCCGAGGTGTT-GAAC 707 Query 40548 ATGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGCGTGGTCCGCATCCCCCACTCCCAG 40607 | | ||| ||||||||||||| ||| ||| | || | || | | Sbjct 706 TCGACC------TCGCAGCGCTCGGCGATCAGCAGGGTGTTG----TCACAGGCTTCGGG 657 Query 40608 ATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTGATGTAGTACCCGGAGCCC 40667 ||| | ||| | |||| ||||||||| || | |||||||||||||||| ||| Sbjct 656 GTGGTCGCGGAACAGTTGGCG--CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCG 599 Query 40668 TCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAGAGCAGAGCG 40727 |||||| ||| |||||||||| ||| ||||||| || | ||| ||||| || || || Sbjct 598 TCGAACTTGAACCGGTTCGGGTCGTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCC 539 Query 40728 TCGTGCGCGGTGCTCTCCT-CGGCCGTGACGTAGTGCGAGTCGTTCGT---GACCACGGG 40783 ||||||||| | ||| | | | | | ||||||||||||||| || ||||| || Sbjct 538 TCGTGCGCGTCGGCCTCGTGCTGATGCG-TGTAGTGCGAGTCGTTGGTGGCGACCAGCGG 480 Query 40784 GGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGCCGCTCGATCTC 40843 | || | |||| ||| || ||| ||| ||| || |||||||||||| Sbjct 479 GATGTTC---AGGTCCTTCGAGAGACGGAGGAGATCGGTCATCACGCGCCGCTCGATCGA 423 Query 40844 CAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCCCGACCGAAGACCTCCAGGTAC-C 40902 ||| ||||||||||||||||| |||||| ||| ||||| | ||| || || | Sbjct 422 CAGACCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTC 363 Query 40903 GGC--CAGCCTCG-GCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCG 40959 ||| | ||| || || || |||||||||| ||||| || || ||| |||| Sbjct 362 GGCTGCGGCCGCGCGC----GCAGCGTCGTACTGTCCGAGACGCAGGCGCGTCTGGATCT 307 Query 40960 CACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCG 41018 | || |||||||| ||||| ||||||| || | | | | || || | ||| ||| Sbjct 306 CGCCTGACGGGCATCCGGTGGTCGCGATCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCG 248 Query 41019 AAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGAGCGGGAGCTGAGCTT 41077 |||||||||||| ||| | || | |||||| | ||| |||||||||||| Sbjct 247 CGGTCCATGCGCGG---CTTGAAGTAGTA-ACCCTCCATGCTCGACCGGGAGCTGAGCCG 192 Query 41078 CATGAGGTTGTGCAGGC---CGGT-CTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACG 41133 | |||||||||| || |||| || |||| | || || | ||| ||||||| Sbjct 191 GAACAGGTTGTGCATGCCCTCGGTGCTCTGACTCCAC----ATGGTCATGTGGGTGTACG 136 Query 41134 CACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCACTTGACGCGCTCCT 41193 ||||| ||| ||||||| | |||||| || | |||||||| |||||| || Sbjct 135 CACCGGAACCCGAGACGTCGTCGCTCTTCTGATCGGGCGAGCCCCACTGCACGCGCGTCT 76 Query 41194 GGTC---GAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCC 41250 ||| | | ||| ||| |||| | || ||||||| ||||||||||||||||| | Sbjct 75 TGTCACTGCGGTGCGTGCCGGGAGTGACATAGGCCTCGAGCCCGATGATCGGCTTGACAC 16 Query 41251 CAGCGGCCTGAGCCG 41265 | ||||| | |||| Sbjct 15 CCGCGGCATTGGCCG 1 >seq10590 Length=4137 Score = 127 bits (140), Expect = 7e-25 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 40115 CCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC------GAA 40168 |||||| ||||||| |||||| || || || ||||| | |||| ||| Sbjct 2673 CCCGTATTTCTCGGCCACGTACTCAATAAC-----CCGGTCGC-GACCATCCATGCAGAA 2620 Query 40169 GTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAG 40228 ||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | || Sbjct 2619 GTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAGCAG 2560 Query 40229 CCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGC 40288 || | | ||||| || || ||||| || |||||| |||||||||||||| Sbjct 2559 GTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACCGGC 2500 Query 40289 AGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTC 40348 | || || ||||| || || ||| ||||||||| ||||| | ||| ||| || || Sbjct 2499 GCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAACTC 2440 Query 40349 GGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGAT 40390 || | |||||||||| ||||||||||| |||| |||| Sbjct 2439 CATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160087121504456