Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2516 259 5e-64 seq2261 163 3e-35 seq3869 147 2e-30 >seq2516 Length=21774 Score = 259 bits (286), Expect = 5e-64 Identities = 161/173 (93%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| Sbjct 1951 TCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCGT 1892 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1891 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 1832 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1831 TCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 1779 >seq2261 Length=3986 Score = 163 bits (180), Expect = 3e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60003 GTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACC 60062 ||||| ||||||| ||||| || ||||||||||| |||||||||||||| || || Sbjct 674 GTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAACGTACG 615 Query 60063 GCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCC 60122 |||||||| || ||||| ||||| |||||||| ||||||||||| | || | |||||| Sbjct 614 GCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCG 555 Query 60123 AGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 60175 ||||| ||||||| || ||||| ||||||||||||||||| ||||| || Sbjct 554 AGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTCGAT 502 >seq3869 Length=8584 Score = 147 bits (162), Expect = 2e-30 Identities = 303/448 (68%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 |||||| || || ||||| || || || || | ||||||| ||||| | || ||| Sbjct 4353 CATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACC 4412 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 |||||| || || || || ||| |||| ||||||| ||||| ||||| ||| | || Sbjct 4413 ACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAG 4472 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 || |||||||| || || || || || || ||||||||||| || || || ||||| || Sbjct 4473 GGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATG 4532 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTC 141484 || |||| ||||| || || || | |||| ||| | || ||| Sbjct 4533 CTTGTAGAACGGAATGCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAG 4592 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 |||||||| || || || || || || || || |||| | ||||||| ||| Sbjct 4593 CGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAAT 4652 Query 141545 TGATGCAGCAGCT-TCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATG 141603 | || | || | |||| || |||| || || || || | || || | |||||| | Sbjct 4653 CG-CGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGG 4711 Query 141604 AACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCT 141663 | |||||||| || || || ||||| || || ||||| || || || |||| || || | Sbjct 4712 AGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGAGATTT 4771 Query 141664 TTTTAGTAGAAACTGCATCATAGAAACG 141691 | || || || || || |||||||| Sbjct 4772 TAAAGGTGGACACCGCGTCGTAGAAACG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538152452613440