Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq2516 199 4e-46 seq2261 116 4e-21 >seq2516 Length=21774 Score = 199 bits (220), Expect = 4e-46 Identities = 157/187 (84%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| |||||||||||||| || |||||||| ||||| ||| || || ||| || Sbjct 1782 GGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCGGTTGAG 1841 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| ||||||||||||||| ||||||| ||||| ||||| || || || ||||| ||| Sbjct 1842 CATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGCTTCAAC 1901 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 |||||||| |||||||||||||| ||||| ||||| ||||||||||| || || || ||| Sbjct 1902 TCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGCCTGTAA 1961 Query 142721 TGGCTAA 142727 |||||| Sbjct 1962 -GGCTAA 1967 >seq2261 Length=3986 Score = 116 bits (128), Expect = 4e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 |||||||| ||||||||||| || || || || |||| ||| || || | | Sbjct 508 GGTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGCGATGGAA 567 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 | || ||||||||||||||| |||||||||||||||| || || || || || |||||| Sbjct 568 AACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACGTTTTAAC 627 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGA 142712 || ||||| |||||||||| || ||||| | |||||||| ||| ||| Sbjct 628 TCCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCACTCAGA 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542467729484520