Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq2100 201 2e-46 seq3094 138 2e-27 seq12 138 2e-27 seq345 113 7e-20 seq347 100 4e-16 seq7636 87.8 3e-12 >seq2100 Length=19628 Score = 201 bits (222), Expect = 2e-46 Identities = 192/246 (78%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| ||||| || ||||| |||| ||||||| | |||||||| |||||| | || Sbjct 19126 GACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACCTGCAG 19185 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 ||||| || |||||||| |||||||| ||| | || || ||||||||||| ||| Sbjct 19186 GAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATGAACTG 19245 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 ||||||||||| ||| |||||||||||| ||| || | || ||||||||||||||| Sbjct 19246 CTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCACCATC 19305 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||| ||||||||| | || || ||| | || ||||| ||||| || || |||||| Sbjct 19306 TGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGT 19365 Query 202088 AGCTGG 202093 |||| Sbjct 19366 TCCTGG 19371 >seq3094 Length=9505 Score = 138 bits (152), Expect = 2e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 202613 GTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCCAA 202672 |||||||| || || ||||| || |||||| ||||||||| || || | |||| || Sbjct 9505 GTCTGGACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGACCAACCTGCAG 9446 Query 202673 CTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCCATC 202732 || | ||| || || ||| | |||||| |||| |||||||| ||||| | || || Sbjct 9445 CTAAGCCGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGATT 9386 Query 202733 TTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGATTAAA 202792 ||||||||| || |||||||||||| ||| | |||| | ||||||||| |||||| Sbjct 9385 TTCGACTACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAAA 9326 Query 202793 GCGCCCGTCGCGATCTAAC 202811 ||||| || ||||| |||| Sbjct 9325 GCGCCGGTGGCGATTTAAC 9307 >seq12 Length=339259 Score = 138 bits (152), Expect = 2e-27 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 201841 AAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 |||||| |||| | || || || |||||| || | |||| || | |||||| | || | Sbjct 190664 AAAAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCA 190723 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 || | || ||||| ||||| ||||||||||||||||| |||| | || || |||| Sbjct 190724 ACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCC 190783 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 | || ||| | ||||| | | || |||||||| || || |||||| ||||| | Sbjct 190784 ACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATG 190843 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 | | |||||||| || ||||| ||| ||||||||||| | ||||| || || || | Sbjct 190844 TAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCAC 190903 Query 202080 AATGGCGT 202087 |||||||| Sbjct 190904 AATGGCGT 190911 >seq345 Length=175672 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || ||||| | || |||||||| ||||||||| || | | Sbjct 150404 CGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 150463 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | |||||||| | || ||||| || | || || || |||||||| ||||| Sbjct 150464 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 150523 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | || || || |||||| ||| | || || ||| ||| || || Sbjct 150524 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 150583 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| |||||||| || | ||||| || | || ||||| || || | || ||||| Sbjct 150584 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 150643 >seq347 Length=20085 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 ||||||||| ||| |||||||||| ||||||||||||||| | || |||||||||| || Sbjct 16290 GGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAATC 16231 Query 674 CTGTCTCCCCTGCCA 688 ||||||||||||||| Sbjct 16230 CTGTCTCCCCTGCCA 16216 >seq7636 Length=2863 Score = 87.8 bits (96), Expect = 3e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC-CG 201848 |||||| |||||||| || ||||| ||||| || || | || || ||| || Sbjct 2308 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 2250 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||| ||||| || |||||| | || || | || ||| | || || ||| | Sbjct 2249 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 2190 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC---ATGAGC 201965 | || || |||||| | |||||||| ||| ||||| ||| || |||| |||| Sbjct 2189 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCAC-TTCAA--AAGCATCGCCAATGAAT 2133 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 || | ||| | | | || ||||||||||| ||| |||| || || ||| | Sbjct 2132 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTA 2073 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||||||||||| || |||| ||| | |||||||||||||| |||| ||| Sbjct 2072 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787725162920920