Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq2100 257 3e-63 seq12 161 2e-34 seq345 141 1e-28 seq3094 123 4e-23 seq4256 98.7 2e-15 seq2048 98.7 2e-15 seq7636 95.1 2e-14 >seq2100 Length=19628 Score = 257 bits (284), Expect = 3e-63 Identities = 241/304 (79%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACG-AGAAAGCTGA 196072 |||||||||||| | || |||||||| | ||| | | || ||| |||| ||| ||| Sbjct 19069 ATGAAACAGTATCTTGATTTGATGCAGAAAGTGCTCACCG-AGGGCACGCCAAAAAATGA 19127 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| |||||||| ||||| ||||| |||||||| |||||||||||||| |||||| | Sbjct 19128 CCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACCTGCAGGA 19187 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 ||| ||||||||||| |||||||| | || | || || |||||||| |||||| | Sbjct 19188 AGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATGAACTGCT 19247 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||||||| | ||||||||||||||| |||||| | || |||||||||| ||||| Sbjct 19248 GTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCACCATCTG 19307 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGC 196312 ||| |||||||| ||||| ||||||| || || || |||||||| || ||||||||| | Sbjct 19308 GGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGTTC 19367 Query 196313 ATGG 196316 ||| Sbjct 19368 CTGG 19371 >seq12 Length=339259 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 196010 GCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC 196069 || ||||||||| || || || || ||||| |||| || || | || || ||||| Sbjct 190611 GCAGATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCAGGGA-ACACAAAAGC 190669 Query 196070 T-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGC 196128 ||| | || || || ||||||||| |||||| || |||||||| | || |||| | Sbjct 190670 ACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCC 190729 Query 196129 GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAAC 196188 |||| || || ||||||||||||||||| | || | ||| || |||||||||| Sbjct 190730 AGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAAC 190789 Query 196189 TGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 196248 || | ||||| | | || |||||||| || || ||||||| ||||| || | | Sbjct 190790 TGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGA 190849 Query 196249 TCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGC 196308 |||||||||||||||| |||||| | || || || ||||| || || || || |||| Sbjct 190850 TCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGC 190909 Query 196309 GTGCATGG 196316 || ||||| Sbjct 190910 GTTCATGG 190917 >seq345 Length=175672 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG-CG 196129 ||||||||||| || ||||| || ||||||| || |||||||| || || ||| || Sbjct 150405 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 150464 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | |||| || | || ||||| || |||| || ||| ||||||||||| || Sbjct 150465 GCGGGTTTTCCTGCCC-TGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 150523 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||||||||| ||||| || |||||| ||||| || || ||| ||| | || Sbjct 150524 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 150583 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || || | |||||||| || || ||||| || | |||||||| Sbjct 150584 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 150643 Score = 93.3 bits (102), Expect = 7e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 150822 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 150881 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAA---TATGGTGGCGGGT 196865 || || || || ||| || | ||||||||| |||||||| | || | ||||| Sbjct 150882 GCATCCTATGCCCTGCTGACCCTCATGGTGGC---GCAGGTCACGGGTCTGCAGCCGGGT 150938 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||| ||| |||||| | ||||| || | |||||| | || ||||| Sbjct 150939 GATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGCAGGC 150994 >seq3094 Length=9505 Score = 123 bits (136), Expect = 4e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 196872 GTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGCAG 196931 |||||||| |||||||||||||| |||||| |||||||| || ||| ||| ||||| Sbjct 9505 GTCTGGACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGACCAACCTGCAG 9446 Query 196932 CTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCCATT 196991 || ||| | ||||| | ||||| ||||| || |||||||| || |||| || ||| Sbjct 9445 CTAAGCCGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGATT 9386 Query 196992 TTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATTAAG 197051 |||||||| || ||||| || || || | |||||||| || || |||||| Sbjct 9385 TTCGACTACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAAA 9326 Query 197052 GCACCGGTTGCCATCTAA 197069 || ||||| || || ||| Sbjct 9325 GCGCCGGTGGCGATTTAA 9308 >seq4256 Length=25676 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 10072 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 10013 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 10012 AGTCAGAGGAGCCAAATTT 9994 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 11834 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 11893 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 11894 AGTCAGAGGAGCCAAATTT 11912 >seq2048 Length=13079 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 4086 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 4027 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 4026 AGTCAGAGGAGCCAAATTT 4008 >seq7636 Length=2863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| ||||||| | | || | |||| | || | | || | Sbjct 2250 GACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCC 2191 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || ||||||||| | |||||||| ||| | ||| | | ||| | | ||| || Sbjct 2190 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 2131 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||| | ||| ||| ||||||||||| ||| ||||| || || ||| ||||| Sbjct 2130 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 2071 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 2070 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770035406733320