Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031128.1 Length=158081 Score E Sequences producing significant alignments: (Bits) Value seq3869 86.0 6e-12 seq4256 84.2 2e-11 seq2048 84.2 2e-11 >seq3869 Length=8584 Score = 86.0 bits (94), Expect = 6e-12 Identities = 267/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 17254 GTTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTT 17313 ||| ||||| | ||| ||||| || | || | ||||| | || ||||||||||| Sbjct 4362 GTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTT 4421 Query 17314 TTTGAGAACAACGACATCATCAAATTGATAATGCCAGAT-GGGAACATAGCATGTTGCCG 17372 ||| || || | | || | || |||||| || ||| | | || ||||||| Sbjct 4422 TTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGA-AGAGGGTTGCCG 4480 Query 17373 ATCCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC---AAATACTTGA 17429 || || || | ||||| || ||||| || |||| || ||| |||| |||| Sbjct 4481 CGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCG---GTCTGGAAATGCTTGT 4537 Query 17430 TGAATGGAAC-CAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCA 17488 ||| |||| ||| || || |||| ||| || ||||| ||||| || | | Sbjct 4538 AGAACGGAATGCAG-CCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCG 4596 Query 17489 CGAATTGCCCCAACATCGAATCCGATGCCAGCACGTTTGGAAACATAATCCACGATGCTT 17548 ||||| ||| | | || |||||||| || || | |||||| || | ||| || Sbjct 4597 CGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCG 4656 Query 17549 TTCGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATTAATACACAAGAGCTG 17608 | | ||||| || || || |||| | || || | ||| | || || |||||| Sbjct 4657 CTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTG 4716 Query 17609 AACTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAG 17655 ||||| ||||| ||||| || ||||||||||| || || || || || Sbjct 4717 AACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAG 4763 >seq4256 Length=25676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 102158 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 102217 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 10069 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 10010 Query 102218 CATCGTCGCCAAAT 102231 || | ||||||| Sbjct 10009 CAGAGGAGCCAAAT 9996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 102158 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 102217 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 11837 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 11896 Query 102218 CATCGTCGCCAAAT 102231 || | ||||||| Sbjct 11897 CAGAGGAGCCAAAT 11910 >seq2048 Length=13079 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 102158 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 102217 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 4083 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4024 Query 102218 CATCGTCGCCAAAT 102231 || | ||||||| Sbjct 4023 CAGAGGAGCCAAAT 4010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505552759067720