Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2100 176 2e-39 seq12 127 8e-25 >seq2100 Length=19628 Score = 176 bits (194), Expect = 2e-39 Identities = 332/479 (69%), Gaps = 12/479 (3%) Strand=Plus/Plus Query 51775 TTTTCGGCGCTCAACTTAGGTATGACCTG-AGTAAGGGCTTCCCGCTCATCACCACCAAG 51833 |||||||| ||| | | | | ||||| || |||| ||||||||| | ||||||||| Sbjct 19154 TTTTCGGCCATCAGATGCGTTTTAACCTGCAGGAAGG-CTTCCCGCTGGTGACCACCAAG 19212 Query 51834 AAGGTG-CATTTCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTTCGGGCTCTACGAA 51892 | || ||||| | || | || || |||||||||| || |||| || || Sbjct 19213 C-GCTGTCATTTACGCTCCATCATCCATGAACTGCTGTGGTTCCTGCAGGGCGACACCAA 19271 Query 51893 CGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGG 51952 | || | |||| || || || ||||| ||| |||||||| ||||||||||| ||||| Sbjct 19272 CATCGCCTATCTGCACGAGAACAACGTCACCATCTGGGACGAGTGGGCGGATGAGAATGG 19331 Query 51953 TAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGGGATG---CTGGTGGCGGCAA 52009 ||||||| || || || || || ||||||||| ||| || | | |||| || | Sbjct 19332 CGACCTGGGGCCGGTCTACGGCAAACAGTGGCGTTCCTGGCCTGCGCCGGATGGCCGCCA 19391 Query 52010 GGTCATCGATCAGATCCATGAAGTCGTCAAATCA-ATTAAGAACGATCCTGATAGTCGAC 52068 ||||| ||||| || | | | || || | || ||||| || || || | Sbjct 19392 ---TATCGACCAGAT-CAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCC 19447 Query 52069 GGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCC 52128 || ||| ||||| || ||||| || || || ||||| | |||||| |||| || |||| Sbjct 19448 GGATCATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCC 19507 Query 52129 ATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGT 52188 | | | ||||| ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 19508 ACGCCTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTATCAGCGTT 19567 Query 52189 CTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCAT 52247 | ||| ||||| | ||| | ||||| || || ||||||||| | ||||| |||| Sbjct 19568 CCTGCGATGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCAT 19626 >seq12 Length=339259 Score = 127 bits (140), Expect = 8e-25 Identities = 225/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| |||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 190849 ATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGG 190908 Query 51984 CGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATC-CATGAAGTCGTCAA 52039 ||| ||| | | | |||||| | ||| || ||||| || || | ||| Sbjct 190909 CGTTCATGGCCAAAACCAGATGGCGGGCA---CATTGACCAGATTACACAAATTATACAA 190965 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 | | || || ||| |||| ||| || || ||||| ||||| |||||||||| || Sbjct 190966 A-CTATAAAAAACAATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGA 191024 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | || ||||||| | | ||||||||| | | ||||| || ||||||||||| || Sbjct 191025 GATAGAACATATGGCACTTCCACCCTGCCATGCCTTTTTCCAGTTTTATGTAGCTGACGG 191084 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 || || || || | |||||||| ||| || || || |||| || || ||||| Sbjct 191085 AAAACTGAGCTGTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAA 191144 Query 52220 CATTGCCAGCTATTCCTTGCTGAC 52243 ||||||| |||| |||| ||||| Sbjct 191145 CATTGCCTCCTATGCCTTACTGAC 191168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190032280652470