Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3381 141 2e-28 seq3382 109 1e-18 seq1351 107 4e-18 seq8653 105 2e-17 >seq3381 Length=12314 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| ||||| | ||||| || |||||||| ||||||||||| || | | || | Sbjct 1177 GAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTACG 1118 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| || || || || || | ||||||||| | | || ||| Sbjct 1117 ACCATCTTCCAATTGCTTT--CCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCT 1060 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || |||||| |||| | | |||| || | ||| || |||||| Sbjct 1059 TCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGA 1000 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||||||||| || |||| |||||| Sbjct 999 GTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||||||| || | || |||||||| || |||||||||||||| ||| | | ||| | Sbjct 1633 GAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCAAGAGTGCG 1574 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | ||||||||| | | ||| || || Sbjct 1573 GCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTC 1514 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||| || || |||| | | | || || | || || || ||||| Sbjct 1513 CTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGAGT 1454 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || |||||||| ||||||| |||||| Sbjct 1453 GATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| ||||||||||| |||||||| ||||||||||| || | | || | Sbjct 948 AGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGA 889 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || || ||||| || | |||||| || | | ||| || ||| Sbjct 888 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATACCCTCC 829 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| | || | |||| || | ||| || || || || Sbjct 828 TTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTG 769 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || | |||||| || |||| ||||| || Sbjct 768 ATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCATGTT 728 >seq3382 Length=4522 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| |||||||||||||| || | | || | Sbjct 4171 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACG 4112 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || | ||||| ||||| ||||| || | ||||||||| | | |||||| Sbjct 4111 ACCGTCCTCCAACTGCTTT--CCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCC 4054 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| |||| | | | || |||| ||| || ||||| Sbjct 4053 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGG 3994 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||| ||||| | ||||| Sbjct 3993 GTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq1351 Length=12664 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| ||||| |||||||| || | | || | Sbjct 4922 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCG 4863 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | ||||||||| | | || || || Sbjct 4862 TCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTC 4803 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| |||| | | |||| || | ||| || || ||||| Sbjct 4802 CTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGT 4743 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| |||| ||||| Sbjct 4742 GATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 >seq8653 Length=1535 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || || |||||||| || | | || | ||||| || || || ||||| || Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | |||||| || | | |||||| ||||| ||||| || || ||||| | Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | |||| || | ||| || || || || ||||| ||||| |||||||||||||| Sbjct 121 CTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCAC 180 Query 152093 GAAGACCTGCATT 152105 |||| ||||||| Sbjct 181 AAAGATCTGCATT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153403510972317