Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq4 168 2e-37 seq360 138 3e-28 seq97 102 2e-17 seq4750 98.7 3e-16 seq12700 84.2 7e-12 >seq4 Length=38681 Score = 168 bits (186), Expect = 2e-37 Identities = 205/277 (74%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 9192 GACGCACAGCAAAGGATTGATGCTGCGCGCAATGATGCCGTTAATGCTGCTGCTAAGTCT 9251 || || ||||| ||||| || |||||||||||||| || ||||||| ||| || Sbjct 4724 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 4665 Query 9252 GGCAGGTTGCAGCAACAACTCGCAAATATCCGCAAGCAGCTT-GTCGGATATTCCACCTC 9310 ||| ||||||||||||| |||| ||||| ||||||| | | | ||| | || | Sbjct 4664 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 4606 Query 9311 TGAGTCCATTGGCAACCCAGCCGCAGATGCCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 9370 | || ||| |||||||||| ||||||||||||||| |||||||||||||| Sbjct 4605 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 4546 Query 9371 ATCTGTCGAAAGAAATAGACAACTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGACT 9430 |||| |||| |||| ||||||||||||| ||||||||| |||| ||||| |||| Sbjct 4545 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 4486 Query 9431 AGCGTGCCAGAAGCAATACGAATCACTGACAAGGAGA 9467 || || | ||||| ||||| || |||||| || || Sbjct 4485 AGTCTGTGAAAAGCAGTACGATTCGCTGACACGGTGA 4449 >seq360 Length=29890 Score = 138 bits (152), Expect = 3e-28 Identities = 166/223 (74%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 36441 CCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATCTCTGTGGTGTATCTG 36500 || || ||||||||||| |||||||| | | | || | || ||||||||| || Sbjct 27240 CCGCCCAGCATCTGCATGGTGCCGCCCACGTTC---ACCACCACTTCGGTGGTGTATTTG 27296 Query 36501 TCTATTCCG--TTGCTGTCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCT 36558 || ||| ||| | | ||||| || || ||||| ||||||||||| ||||| |||| Sbjct 27297 TCCTGACCGGATTGAT--CGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCT 27354 Query 36559 GCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATAC 36618 | || ||||| || || || || || || |||||||| ||||| ||||| | |||| | Sbjct 27355 GAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGC 27414 Query 36619 GATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATC 36661 | |||||||| ||||| |||||| |||| || |||||||| || Sbjct 27415 GGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTC 27457 >seq97 Length=44549 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36526 TACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTG 36585 |||| || |||||||| ||||||||||| ||||||| || || || || ||||| || | Sbjct 4965 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 4906 Query 36586 CAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTT 36645 | |||||||| || || ||||| | || | |||||||| |||||||| || | | | Sbjct 4905 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 4846 Query 36646 CTCCTGTCTGCTTATC 36661 | |||||||| || || Sbjct 4845 CCCCTGTCTGTTTGTC 4830 >seq4750 Length=4641 Score = 98.7 bits (108), Expect = 3e-16 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 36439 TACCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATCTCTGTGGTGTATC 36498 ||||||| || | |||||| ||| ||| | || | || ||| || |||||||| | Sbjct 4316 TACCACCCAGGAGCTGCATTCTGCCCTGCATGT-CG--ACGATAATTTCGGTGGTGTACC 4260 Query 36499 TGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCT 36558 | || |||| | || ||| | || || |||||| ||||||||||| |||| Sbjct 4259 GTTTGATACCGTCTTTTTC---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCT 4203 Query 36559 GCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATAC 36618 |||| ||||| || || || || || || | ||| || | |||||| || | || || Sbjct 4202 GCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACAC 4143 Query 36619 GATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATG 36678 | ||||| || |||| ||| || | ||| || ||||| || ||||||||||| || Sbjct 4142 GGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTG 4083 Query 36679 TTGCAA 36684 |||||| Sbjct 4082 TTGCAA 4077 >seq12700 Length=2524 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 36537 AGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCA 36596 |||| |||||||||||| |||||||||||||| || |||||||| || || | || ||| Sbjct 397 AGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCTCTGCA 338 Query 36597 AGTTTCCCGAATAT-GACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTG 36655 | || ||||| || ||| | ||| ||||| || || | || ||| | || || || Sbjct 337 ACCTTGCCGAACATCGAC-ACACGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTG 279 Query 36656 CTTATCTTTCCACTGCTC 36673 ||| || ||||||| || Sbjct 278 CTTGTCGGTCCACTGTTC 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152032222376724