Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq85 93.3 5e-14 seq19411 91.5 2e-13 seq103 91.5 2e-13 seq16 87.8 2e-12 seq102 84.2 3e-11 seq12517 82.4 9e-11 >seq85 Length=367292 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct 146500 GTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGACGGTCGCTGGTTCGAATCCAGC 146441 Query 157486 C 157486 | Sbjct 146440 C 146440 >seq19411 Length=388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 40 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAAT 99 Query 17919 CCGCTATTCTCCA 17931 | ||| ||||| Sbjct 100 CTCCTAGGCTCCA 112 >seq103 Length=5517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2101 AGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2160 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 2161 CTCCGTTATTCTCCA 2175 >seq16 Length=176877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 90252 AGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGA 90311 Query 17917 GTCCGCTATTCTCCA 17931 |||||||||||||| Sbjct 90312 CTCCGCTATTCTCCA 90326 >seq102 Length=326246 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 158115 TATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAG- 158172 || ||| ||||| |||| |||| | ||| | ||||||||||||| ||| | ||||||| Sbjct 107208 TAAGGAGGGGTGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTAGGTGAGAGC 107267 Query 158173 CTTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 || ||||||||||||||||||||| |||| Sbjct 107268 CTACCGTGGGTTCGAATCCCACCCCCTCCG 107297 >seq12517 Length=681 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 158206 CGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAA 158265 ||||| ||||||||||||||||||||||| ||||||||| ||| | || |||||| | Sbjct 135 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 76 Query 158266 TCCTATCACCCCGAC 158280 |||| || ||||||| Sbjct 75 TCCTGTCGCCCCGAC 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596096800458320