Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq360 141 2e-29 seq40 100 7e-17 seq501 96.9 9e-16 seq4750 86.0 2e-12 seq62 86.0 2e-12 seq76 82.4 2e-11 >seq360 Length=29890 Score = 141 bits (156), Expect = 2e-29 Identities = 241/347 (69%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 26637 GCCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATC 26696 ||| || ||||| |||||||| || || ||| || | |||||||| ||| | || Sbjct 27239 GCCGCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACTTCGGTGGTGTATTTGTC 27298 Query 26697 CTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 26756 ||| | | |||||| ||| || | || |||| | |||||||| || |||| ||| Sbjct 27299 CTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGAGA 27358 Query 26757 ACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTG 26816 ||||| ||||||||||| | || | ||| |||||||| ||| || || || ||||| Sbjct 27359 GCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGGTG 27418 Query 26817 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 26876 |||||| |||||||| || || || || ||||| |||||||| ||| || || || Sbjct 27419 CCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGCCAGGATTCGGAAGTTGC 27478 Query 26877 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGG-GTGAATATCTGATTTCTGGATCATGC 26935 | || | ||| || | || || ||| || || | | ||| || || ||| Sbjct 27479 CAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATG--TAGCGTACTTCCGGGTCCTGC 27536 Query 26936 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 || || ||| | | |||||||| |||||||||||||| ||||| Sbjct 27537 CCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 27583 >seq40 Length=14228 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 24245 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 24304 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 24305 GATG----TTATTGCTGC 24318 |||| | |||||||| Sbjct 3108 GATGCTGTTCATTGCTGC 3125 >seq501 Length=12468 Score = 96.9 bits (106), Expect = 9e-16 Identities = 98/128 (77%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 22518 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 22566 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 22567 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACC 22626 |||||||| || || || ||||| | || || |||||||| ||||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 22627 ATTTCGAT 22634 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq4750 Length=4641 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 26734 TTGCCTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGT 26793 || ||||| | || |||| || ||||| ||||||||||| | || ||||| || | | Sbjct 4221 TTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACT 4162 Query 26794 TTCCCGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTA 26853 ||||| || ||||||||||| || |||| || || || ||| |||||||| Sbjct 4161 TTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTTG 4102 Query 26854 TCACGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGA 26913 ||| ||| || || || |||| | || || | | || | || | | | ||| | Sbjct 4101 TCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTACTG-CATTACCGTTCGGTAA 4043 Query 26914 ATATCTGATTTCTGGATCATGCCCA-AGGCGACCAATAATGATCACCTTATTTACGCC 26970 || | |||||||||| || ||| ||| | |||| | |||||| ||||||||||| Sbjct 4042 GTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATTTACGCC 3986 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22437 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 22488 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 >seq76 Length=48202 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 || || |||||||| || | || | ||| || || || ||| || ||||| |||||| Sbjct 1547 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 1488 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || |||||||||||| ||| || || || || |||||||| |||||| || || Sbjct 1487 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 1428 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 || |||||||| | || || || | |||| || | || ||| ||||||| || Sbjct 1427 ACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 1369 Query 26938 AAGGCGACCAATAATGATCACCTTATT 26964 || || || | | ||| ||||| || Sbjct 1368 CAGACGCCCGACGAGGATGACCTTGTT 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129252660546470