Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq19 114 1e-20 seq3533 86.0 7e-12 >seq19 Length=770976 Score = 114 bits (126), Expect = 1e-20 Identities = 528/832 (63%), Gaps = 12/832 (1%) Strand=Plus/Minus Query 23208 AACACCCA--TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCT 23265 ||||||| |||||||||| || || |||||| | || || ||||| || || || | Sbjct 360863 AACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGC 360804 Query 23266 AATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT 23325 | || || | |||||||||||||| ||||| | | || ||||| || | Sbjct 360803 AGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCC 360744 Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385 | ||||| | || ||||| ||||| |||||||| || |||||| | || Sbjct 360743 AGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTC 360684 Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAACAGC 23444 || || || || || || | ||||| | ||| || | ||||| || || || Sbjct 360683 ATCCCGATCAGGGCAACCGGCAAGGCATC-TGTAATAAATTCCTTTTCGATTTCTACCGC 360625 Query 23445 ATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAA 23504 || || ||| | || ||||| | || || || ||| | ||| | | Sbjct 360624 GTCGCGGATAATTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAG 360565 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 | || ||||| |||||||| | || ||||| || |||||| |||||| ||| || Sbjct 360564 CAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGT 360505 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA-A 23623 || |||||||| | |||| |||||| | ||| || || | | || | | ||| | | Sbjct 360504 TAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGA 360446 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 ||||||| || || || || || || ||||| | |||| |||| || | | | Sbjct 360445 AGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA- 360387 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 ||||| || ||| | || || |||||||| || || || | | Sbjct 360386 -----ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGG 360332 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | | || || |||||||||| |||| | ||||| ||||| || || | || Sbjct 360331 CATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCAT 360272 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 | ||||||| || || ||||| || ||||| || ||||||||||| | ||||| | Sbjct 360271 AGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGG 360212 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | || || || | | || | || | ||||| || ||||| || ||||| | Sbjct 360211 GAAGCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTG 360152 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCC 23983 ||||||| |||||||| | || || ||||| | || | || ||| || | || Sbjct 360151 CAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCC 360092 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 | | || || | || | |||| ||| ||| | ||||| |||||||| Sbjct 360091 AGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 360040 >seq3533 Length=1137 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| || || ||||| || || || | ||| |||| || || ||||| || | Sbjct 954 CAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTGGAAAAGGTAAGG 895 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 ||||||||||| || | ||| || | ||| | || ||| |||| | | ||| ||||| Sbjct 894 CCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCA-CAAAAGCTGCCGCTGAAGAA 836 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGT 23661 ||||||||||| || ||||| ||||| | |||| Sbjct 835 GATACCCTCAACCGCAGCAAATGCCACCAAACGT 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521303999477800