Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1351 172 1e-37 seq4240 156 1e-32 seq3381 156 1e-32 seq3382 150 4e-31 seq8653 136 1e-26 >seq1351 Length=12664 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| || |||| ||| Sbjct 4935 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCTGAC 4994 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| |||||||| ||||| || |||||||| || |||||||| Sbjct 4995 ACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAGCAG 5054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | ||||||| ||| |||||| | Sbjct 5055 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAACATT 5114 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || || | || |||||||| Sbjct 5115 CAAAAGGAGTCCACCCTTCACTTGGTATTGAGACT 5149 Score = 149 bits (164), Expect = 2e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || | || ||| Sbjct 4479 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCCGAC 4538 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || ||||| || ||||||||| Sbjct 4539 ACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAA 4598 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || || || |||||| | || || | || || ||| | Sbjct 4599 CGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAACATT 4658 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 4659 CAAAAGGAGTCCACCCTTCA-CTTGGTT 4685 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||||| || ||||| || ||||| || ||||| || | || ||| Sbjct 4707 CAAATCTTTGTGAAGACTCTAACTGGAAAGACCATCACTCTGGAGGTCGAGGGATCCGAC 4766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || || || || |||||||| Sbjct 4767 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAGCAG 4826 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || |||||| | || || | || || ||| | Sbjct 4827 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTCGGTGACTACAACATT 4886 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 4887 CAAAAGGAGTCCACCCTTCA-CTTG 4910 >seq4240 Length=2116 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || || || ||||| ||||| || |||| ||| Sbjct 1218 CAGATTTTCGTAAAAACACTCACTGGTAAGACTATTACCCTTGAGGTCGAGGGCTCGGAC 1277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || ||||| || || ||||||||| Sbjct 1278 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAGCAA 1337 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||| | || ||||| | || || | || || || || Sbjct 1338 CGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAATATC 1397 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || ||||| || ||| Sbjct 1398 CAGAAGGAGTCAACTCTCCAT 1418 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||||| ||||| ||| |||| ||| Sbjct 1446 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAAGGCTCTGAC 1505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 1506 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACCAGCAG 1565 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| |||||||| || || | ||||| | || || || | Sbjct 1566 CGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAATATT 1625 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 1626 CAGAAGGAGTCCACCCTTCA-CTTG 1649 >seq3381 Length=12314 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||| | || ||||| || |||||||||||||| || | || || Sbjct 1190 CAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCGGAT 1249 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || || || || || ||||| || || |||||| Sbjct 1250 ACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAGCAA 1309 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || ||||| ||||| | ||||||| ||| || ||| | Sbjct 1310 CGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAACATT 1369 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || || | ||| | |||||| Sbjct 1370 CAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTC 1405 >seq3382 Length=4522 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || ||||| || |||||||| ||||| || | || || Sbjct 3956 CAAATTTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAGGGTTCCGAT 4015 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 4016 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAGCAG 4075 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||| | || || || | || || | || || ||| || Sbjct 4076 CGTCTCATCTTTGCCGGAAAGCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATC 4135 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 4136 CAAAAGGAGTCCACCCTTCA-CTTG 4159 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || | || ||| Sbjct 4184 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCCGAC 4243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || ||||| || || ||||||||| Sbjct 4244 ACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAGCAA 4303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||| | || ||||| | || || | || || || || Sbjct 4304 CGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAATATC 4363 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || ||||| || ||| Sbjct 4364 CAGAAGGAGTCAACTCTCCAT 4384 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||||| ||||| || |||| ||| Sbjct 4412 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGGCTCTGAC 4471 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||||||||||||||||| ||||| || ||||| || || ||||| || Sbjct 4472 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACC 4521 >seq8653 Length=1535 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| |||||||| || || || |||||||||||||| || |||| ||| Sbjct 189 CAGATCTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTCGAGGTTGAGGGCTCTGAC 130 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || || || || |||||||| || || ||||| Sbjct 129 ACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGATCAGCAG 70 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || || | || || ||| | Sbjct 69 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTCGGTGACTACAACATT 10 Query 178104 CAAAAAGA 178111 || || || Sbjct 9 CAGAAGGA 2 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| || ||||| || ||||| || |||| ||| Sbjct 417 CAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTCTGAC 358 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||||||| ||||||||||| ||||| || || || ||| Sbjct 357 ACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAACAA 298 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || || ||||| || | ||||| | ||| || ||| | Sbjct 297 CGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAACATT 238 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 237 CAGAAGGAGTCTACCCTCCA-CTTG 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203295860455038