Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4240 107 2e-18 seq1351 104 2e-17 seq13839 93.3 4e-14 seq8653 93.3 4e-14 seq3381 89.7 5e-13 >seq4240 Length=2116 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||||||||| || ||||| ||| Sbjct 1669 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAG 1610 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| ||||| || || || ||||| ||||| | || Sbjct 1609 AGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 1550 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | ||||| || ||| Sbjct 1549 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACC 1490 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 1489 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||||||||| || || ||||| ||| Sbjct 1441 CCTCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAG 1382 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || | |||||| ||||| || || || || || ||||| | ||| Sbjct 1381 AGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGA 1322 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| || ||| | | | ||||| ||| ||| Sbjct 1321 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---CGAGCCCTCG 1265 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || ||||| || || || ||||||||||||||||| Sbjct 1264 ACCTCAAGGGTAATAGTCTTACCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 >seq1351 Length=12664 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||| |||||||| ||||| | Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 4870 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGA 4811 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | |||||| ||| ||| Sbjct 4810 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4751 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || || || ||||| Sbjct 4750 TCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| |||||||| ||||| | Sbjct 4702 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4643 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || ||||||||||| || |||| || || ||||| | || Sbjct 4642 AGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGG 4583 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | |||||| ||| ||| Sbjct 4582 ATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4523 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || || || ||||| ||||| |||||||| Sbjct 4522 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||| || || ||| |||||| ||||||||||||||| || ||||| | || Sbjct 5143 AATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATCC 5084 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||||||||| || || || ||||| ||||| | || | | |||||||| | Sbjct 5083 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGT-C 5025 Query 41771 ATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | || || | ||| | | ||||| ||| ||||| | || || || Sbjct 5024 TTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAGTGTGATGGT 4965 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| |||||||| Sbjct 4964 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq13839 Length=228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||| |||||||| ||||| | Sbjct 156 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 97 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || || || ||||| ||||| | || Sbjct 96 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 37 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 36 ATTCCCTCCTTGTC 23 >seq8653 Length=1535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||| | Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||||||||| || |||| || ||||| || | || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| | ||||| | ||| | | |||||| ||| || Sbjct 314 ATACCTTCTTTGT-CTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGAC 372 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| |||||||| || || ||||| Sbjct 373 CTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq3381 Length=12314 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||| ||||| ||||| ||||| ||||||||| | || ||| Sbjct 939 ACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGACCATCCTCG 880 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || ||||| || || | || | | |||||| | | || Sbjct 879 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATACCCTCCTTAT-CTTG 821 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | ||| | | ||||||| ||| ||||||| || || || || Sbjct 820 GATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTGATGGTCTT 761 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || |||| ||||| || || || |||||||| Sbjct 760 GCCAGTCAAAGTCTTAACAAAGATTTGCATGTT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462140881812400