Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq753 95.1 9e-15 seq372 95.1 9e-15 seq1090 87.8 1e-12 seq288 87.8 1e-12 >seq753 Length=293645 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | | |||| ||| || || || || || || ||||||||||||||| Sbjct 49614 CCTCCCCTCAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 49673 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || |||| || ||||| ||| |||| || | || ||||| || Sbjct 49674 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGG 49733 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||||||||| | | ||| ||||||| || || | Sbjct 49734 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACT 49793 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| | || || || || || ||||| Sbjct 49794 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 49840 >seq372 Length=15075 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || || || ||||| ||||||||||||||| Sbjct 1402 CCTCCCCTAAGGCGGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 1461 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||| || ||||| || |||| | || ||| || || || Sbjct 1462 AAGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCGGGAGGG 1521 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||||| || | | | ||||| || ||| | Sbjct 1522 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCCACT 1581 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| ||||||||||||| || || || || || ||||| Sbjct 1582 TCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 1628 >seq1090 Length=245726 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| ||| || || || || || || |||||||||||||| Sbjct 31476 TCCGCCGCGAAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 31417 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || || |||| ||| || ||||| |||| | || || || || || Sbjct 31416 CAGGGTGCGACCGTCCTCCAGTTGCTTACCCGCGAAGATCAATCGCTGCTGGTCGGGAGG 31357 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||||| || | ||| ||| ||| | |||| Sbjct 31356 GATACCCTCCTTGTCTTGGATCTTTTGCTTCACGTTCTCAATAGTATCAGAAGACTCGAC 31297 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| ||||||| ||||| || || || || || ||||| Sbjct 31296 CTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 31249 >seq288 Length=27758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| || || || || || || |||||||||||||| Sbjct 385 TCCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 326 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || ||| |||| || ||||| ||| |||| || | ||| ||||| ||| Sbjct 325 CAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGG 266 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || || | ||||||||| | ||| ||||| | ||| Sbjct 265 AATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCAATGGTGTCGGAGCTCTCCAC 206 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| | || || ||||| || || || || || ||||| Sbjct 205 CTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336579675725