Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1059 158 2e-33 seq1057 136 5e-27 >seq1059 Length=95284 Score = 158 bits (174), Expect = 2e-33 Identities = 440/673 (65%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| |||||||| |||| |||| || ||| ||| | ||||| | || ||| Sbjct 57080 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 57021 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 57020 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 56961 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 56960 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 56901 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | || ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 56900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 56841 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 56840 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 56781 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 || ||||| || || ||| ||||| ||||| || | | || || Sbjct 56780 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 56721 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 56720 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 56661 Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 56660 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 56601 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 || || || | || || | ||||| ||||| | | || | |||||||| ||| Sbjct 56600 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 56541 Query 66522 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 56540 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 56483 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 56482 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 56423 Query 66640 TAAAACCAAAATA 66652 |||| ||||| || Sbjct 56422 TAAAGCCAAAGTA 56410 >seq1057 Length=235048 Score = 136 bits (150), Expect = 5e-27 Identities = 306/455 (67%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || ||| || || || || || | || || || | || || | |||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 36267 || ||||||| ||||| || || | || || ||||| || |||| |||| || || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAACC 119907 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCA 36325 || ||||| || ||||| ||||| |||||||| || || | | || || | | Sbjct 119908 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGG 119967 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 || | | |||||| | ||||| ||||||||||| || || | ||||| ||||| Sbjct 119968 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 120025 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || || |||||||| | ||||| || ||||| || || || || || | || Sbjct 120026 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 120085 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| ||||| || ||||| || ||||| |||||||| |||||||| || | ||| Sbjct 120086 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 120145 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | | || ||||| | || || | || | || || ||| || || || Sbjct 120146 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 120205 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 ||| || ||||| ||||| || || || ||||| Sbjct 120206 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 120240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159595408200