Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1059 181 2e-40 seq1285 178 2e-39 seq1057 165 1e-35 >seq1059 Length=95284 Score = 181 bits (200), Expect = 2e-40 Identities = 415/623 (67%), Gaps = 4/623 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| |||||||| ||||| | || || ||| ||||| ||||| | || ||| Sbjct 57080 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 57021 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 ||||| || || ||||| ||||| || || || |||| ||| || || ||| Sbjct 57020 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 56961 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || ||||||| | ||||||| || || ||||| || || || || ||| | | | Sbjct 56960 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 56901 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 56900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 56841 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 56840 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 56781 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 80220 || ||||| || || ||| ||||| |||||| || | | || || Sbjct 56780 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 56721 Query 80221 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 80280 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 56720 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 56661 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 ||||| || || |||| | || | ||| ||| ||| | ||| | || || || Sbjct 56660 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 56601 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || || || | || || | ||||| ||||| | | |||| |||||||| ||| Sbjct 56600 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 56541 Query 80401 TCAATAGCTGATTCTATATC--CCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 56540 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 56483 Query 80459 GCTGAGGTCTTTCAACGATCTTG 80481 | ||||| || |||||||||||| Sbjct 56482 GTTGAGGCCTCTCAACGATCTTG 56460 >seq1285 Length=126460 Score = 178 bits (196), Expect = 2e-39 Identities = 370/551 (67%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||| |||||||| || || || | ||||| || ||| Sbjct 51237 CAGGCAAAGTCGCAGTGCATGCCCTCGTCCCTGCTGATCTGCTCGTTACTGAAACAAAGT 51296 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| | ||| || | |||||| |||| ||| || ||||| || ||| Sbjct 51297 CCAGGCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAG 51356 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || || || || ||||||||||| || || | | || | | | || || | |||| Sbjct 51357 ATGCCCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCTATC 51416 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 ||||| ||||| || ||||||||| || ||||| || || ||||| || ||| Sbjct 51417 CACTTGATGGCCCACTCAGCCTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAG 51476 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 || || || || || || || || || ||||||| ||| ||||| ||| Sbjct 51477 AGGCGGTCCTTCTCCAATGGGTCCTTCACGTAGGTGTCGATCAGAAGGGAGTACATCTCC 51536 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || || || |||||||| |||||||| |||||||| || | |||||||| | ||| Sbjct 51537 GAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGGACTTGC 51596 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || || | || || | || || || ||| || || ||||| ||| ||||| Sbjct 51597 ACCTCCTTCATGAAGCGGACGGCCAAGTTCTCAACAACGATGCCGTCCGAGGCGGCAAAG 51656 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || |||| || || | ||||||| |||| | ||||| ||||| || || Sbjct 51657 AAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGTTTCTTCCAGTCGGTG 51716 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | ||||| | | || || || || | ||||| || ||||| ||||| || ||| Sbjct 51717 AGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTAC 51776 Query 50500 ATATTCCAGAT 50510 || | |||||| Sbjct 51777 ATCTCCCAGAT 51787 >seq1057 Length=235048 Score = 165 bits (182), Expect = 1e-35 Identities = 319/466 (68%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| || || || || |||| || || || | || || || |||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCC 50069 || ||||||| ||||| || || | || || ||||| || |||| |||| || || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAACC 119907 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC--TGGCG 50127 || |||||||| ||||| |||||||||||||| | || | | || || || | Sbjct 119908 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGG 119967 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || | | |||||| | ||||| ||||||||||| || || | ||||| ||| || Sbjct 119968 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 120025 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| |||||||| | ||||| || ||||| || || || ||||| | || Sbjct 120026 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 120085 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| ||||| || ||||| || ||||| || ||||| |||||||| || | ||| Sbjct 120086 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 120145 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | | || ||||| | || || |||| | || || ||| || || || Sbjct 120146 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 120205 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT 50413 ||| || ||||| ||||| || || || ||||| || ||||| Sbjct 120206 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAAGTGGCGTTCGT 120251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254389732200