Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1391 102 6e-17 seq2 93.3 3e-14 seq1090 84.2 2e-11 >seq1391 Length=76266 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| |||| ||||||||| | ||||| |||| || ||||| |||| ||| Sbjct 37507 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCC 37566 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| |||| ||||| ||||||| || | ||||| || || | Sbjct 37567 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGG 37626 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| | | | |||||| ||| ||| || || | || ||||| || Sbjct 37627 ATCTTTTGCTTGACGTTCTCGATGGTGTCG-GAGCTCTCCACTTCCAGGGTAATAGTCTT 37685 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || || || || ||||| Sbjct 37686 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 37715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | ||||| |||| |||| |||||| || | ||||| |||| Sbjct 37944 GCCTCCCCTCAGACGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 38003 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| |||| |||| || ||||||||||| || | ||||| || || | || Sbjct 38004 CAAGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGG 38063 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| || ||||| | | | |||||| ||| ||| | Sbjct 38064 AATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCG-GAGCTCTCCA 38122 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || || || ||||| || || || || || || ||||||||| Sbjct 38123 CCTCGAGGGTGATGGTCTTTCC-GTGAGGGTCTTGACGAAGATTTGCATT 38171 >seq2 Length=914981 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| |||||| || | ||||| |||| ||| ||||| |||| ||| Sbjct 65903 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACCGTCCTCC 65962 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| || | ||||| ||||| | || | ||||| || || | Sbjct 65963 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGG 66022 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | |||||| | | | |||||| ||| ||| || || | || ||||| || Sbjct 66023 ATCTTTTGTTTGACGTTCTCGATGGTGTCG-GAGCTCTCCACTTCCAGGGTAATAGTCTT 66081 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || || || || ||||| Sbjct 66082 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 66111 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| ||||| | | ||||| |||| ||| |||||| || | ||||| |||| Sbjct 66340 GCCTCCCCGCAGACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 66399 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || |||| || | ||| || ||||| || |||| || || || |||| || Sbjct 66400 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGG 66459 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || ||||| | | | |||||| | ||| || Sbjct 66460 GATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGATGACTCCAC 66519 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || || || ||||| |||||||||||| Sbjct 66520 TTCGAGGGTAATGGTCTTTCCCGTGAGGGTCTTCACGAAAATTTGCATT 66568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| |||| ||| |||||| || | |||||| || | Sbjct 66113 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGAATATTGTAGTCAGCA 66172 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || ||||||||||| ||||| ||||| || |||| || Sbjct 66173 AGAGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGGGGA 66232 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| || || || | ||| ||||| || |||||| Sbjct 66233 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCAATGGTGTCAGAAGACTCGACC 66292 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || |||||||| | || || || || || ||||| Sbjct 66293 TCAAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 66339 >seq1090 Length=245726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | ||||| |||| ||| |||||| || | ||||| |||| Sbjct 31248 GCCTCCCCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 31189 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| |||| || ||||||||||| || | ||||| || |||| || Sbjct 31188 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 31129 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| || ||||| | | | |||||| ||| ||| | Sbjct 31128 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGG-AGCTCTCCA 31070 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || || || || ||||| || || || || |||||||||||| Sbjct 31069 CCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 31020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362140053090