Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1059 167 3e-36 seq1057 150 2e-31 >seq1059 Length=95284 Score = 167 bits (184), Expect = 3e-36 Identities = 442/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| |||||||| ||| | || || ||| ||| || ||||| | || ||| Sbjct 57080 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 57021 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | ||||| ||||| || || || |||| ||| || || ||| Sbjct 57020 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 56961 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 || ||||||| | ||||||| || || ||||| || || || || ||| | | | Sbjct 56960 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 56901 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 56900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 56841 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 56840 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 56781 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | ||||| || || ||| ||||| |||||| || || | || || Sbjct 56780 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 56721 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 56720 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 56661 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 56660 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 56601 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 || || || | || || | ||||| ||||| | | |||| |||||||| ||| Sbjct 56600 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 56541 Query 72484 TCAATAGCTGATTCTATATC--CCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 ||||| || | | || || |||| ||| || || | || || ||||| | ||| | Sbjct 56540 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 56483 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 56482 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 56423 Query 72602 TAAAACCAAAATA 72614 |||| ||||| || Sbjct 56422 TAAAGCCAAAGTA 56410 >seq1057 Length=235048 Score = 150 bits (166), Expect = 2e-31 Identities = 317/468 (68%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || ||| || || || || |||| || ||||| | || || | |||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 || ||||||| ||||| || || | || || ||||| || || | |||| || || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAACC 119907 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCA 42232 || |||||||| ||||| ||||| |||||||| || || | | || || | | Sbjct 119908 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGG 119967 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 || | | |||||| | ||||| ||||||||||| || || | ||||| ||| || Sbjct 119968 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 120025 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| |||||||| | ||||| || ||||| || || || ||||| | || Sbjct 120026 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 120085 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| || || || ||||| || ||||| || ||||| |||||||| || | ||| Sbjct 120086 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 120145 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | | || ||||| | || || |||| | || || ||| || || || Sbjct 120146 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 120205 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCC 42520 ||| || ||||| ||||| || || || ||||| | ||||||| Sbjct 120206 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAAGTGGCGTTCGTCC 120253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125735269800