Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1285 224 1e-53 seq1539 210 3e-49 seq1059 163 4e-35 seq1057 159 5e-34 >seq1285 Length=126460 Score = 224 bits (248), Expect = 1e-53 Identities = 595/896 (66%), Gaps = 32/896 (4%) Strand=Plus/Minus Query 124967 CCTCGAAGAGCCCAGCAGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGA 125026 |||||| ||| |||| | ||| ||||| ||||| | | || | || ||||| Sbjct 51839 CCTCGAGGAGAACAGCTCCCGCTTTGTGCTGTTCCCCATTCGCCACCACAAGATCTGGGA 51780 Query 125027 AATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGA 125086 |||||||| ||||| ||||| ||| ||||| | ||| ||||| || || || | || Sbjct 51779 GATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGGTGGACCTTGCCCAAGA 51720 Query 125087 CCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTT 125146 || ||| ||| ||| | | |||| ||||| | ||||| | ||| | | Sbjct 51719 TCTCACCGACTGGAAGAAACTCT---CTGAGGACGAGCGCTATTTTATCACCCACGTCCT 51663 Query 125147 GGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCA 125206 |||||||||||||| ||| || || ||||| || || || || ||| | Sbjct 51662 GGCCTTCTTTGCCGCCTCGGACGGCATCGTTGTTGAGAACTTGGCCGTCCGCTTCATGAA 51603 Query 125207 AGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265 ||| || | || |||| ||| ||||| ||||| || || ||| |||||||| Sbjct 51602 GGAGGTGCAAGTCCCCGAGGC-TCGCTGCTTCTACGGCTTTCAGATCGCCATTGAGAATA 51544 Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC 125325 | |||||||| |||||||| ||||| |||| ||| | || || || Sbjct 51543 TCCACTCGGAGATGTACTCCCTTCTGATCGACACCTACGTGAAGGACCCATTGGAGAAGG 51484 Query 125326 ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGA 125385 || ||||| ||||| ||||| || ||||| | | || || |||||| | |||| | Sbjct 51483 ACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAGGCTGAGTGGGCCA 51424 Query 125386 TTCGGTGGATCGATGACGACAA-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCC 125444 | |||||| || || | | | ||| | | ||| | | ||||| || ||||| Sbjct 51423 TCAAGTGGATAGAAAACCCCGACGGCTTTGCTCACCGGC----TCGTGGCCTTTGCCGCT 51368 Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || ||||||||||| || || ||| ||| |||||||||||| | |||||| | || Sbjct 51367 GTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGTGCCATCTTTTGGTTGAAGAAGAGAGGC 51308 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 |||||||| ||||| |||||||||| || | ||||||||| | ||||| Sbjct 51307 CTCATGCCTGGACTTTGTTTCAGTAACGAGCAGATCAGCAGGGACGAGGGCATGCACTGC 51248 Query 125565 GACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA---TCCAGCGA- 125620 ||||||||| || || | |||| || ||| || |||| |||| ||| Sbjct 51247 GACTTTGCCTGCCTCCTCTA---CAACA---TGA-TCCAGAA--CAGACCCTCCAACGAC 51197 Query 125621 TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGA 125680 || | || ||| ||| | | || || ||| ||| ||| | |||||| | | ||| Sbjct 51196 TGT---GCCCACCAAGATTATTGCTGAGGCTGTGGAGATTGAAAAGGAGTTTGTGAGCGA 51140 Query 125681 ATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTT 125740 ||||| || || || | || ||||||||| | |||| |||||| ||||||| ||||| Sbjct 51139 GTCCCTTCCAGTGAGGCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATTGAGTT 51080 Query 125741 TGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAA 125797 |||||| || || || ||| | | | ||| || ||||| |||||||| | ||| Sbjct 51079 TGTGGCGGACCGCCTGCTG---GTGGCCCTCGGCTGCGAGAAGATCTACAACGCTACGAA 51023 Query 125798 TCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 || ||||| | ||| ||| || | || || ||||||||||||||||||| Sbjct 51022 CCCGTTTGACTGGATGGAGCTCATCTCCTTGGAAGGCAAGACCAACTTTTTCGAGA 50967 >seq1539 Length=27205 Score = 210 bits (232), Expect = 3e-49 Identities = 576/865 (67%), Gaps = 33/865 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| ||||| | | || | || ||||| |||||||| ||||| ||||| ||| Sbjct 25684 CTGTTCCCCATTCGCCACCACAAGATCTGGGAGATGTACAAGAAGGCCGAGGCCAGCTTC 25743 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||| || || || | || || ||| ||| ||| | | || Sbjct 25744 TGGACCGCCGAGGAGGTGGACCTTGCCCAAGATCTCACCGACTGGAAGAAGCTCT---CT 25800 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | ||||| | ||| | ||||||||||||||| ||| || |||||| Sbjct 25801 GAGGACGAGCGCTATTTTATCACCCACGTCCTGGCCTTCTTTGCCGCCTCGGACGGAATC 25860 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || || || || || ||| | ||| || | || |||| ||| || Sbjct 25861 GTTGTGGAGAACTTGGCCGTCCGCTTCATGAAGGAGGTGCAAGTACCCGAGGC-TCGCTG 25919 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| || || ||| |||||||| | |||||||| |||||||| | ||||| Sbjct 25920 CTTCTACGGCTTTCAGATCGCCATTGAGAATATCCACTCGGAGATGTACTCC-CTCTGAT 25978 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 |||| ||| | || || | || || ||||| ||||| ||||| || || Sbjct 25979 CGACACCTACGTGAAGGACCCTTGGAG-AAGGACCGCCTCTTCAACGCCATCGAGACCGT 26037 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA-GTCTT 125412 ||| | | || || || ||| | |||| || |||||| || || | | | ||| Sbjct 26038 GCCTACCGTCCGAAAGAAAGCTGAGTGGGCCATCAAGTGGATAGAAAACCCCGACGGCTT 26097 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | | ||| | | ||||| ||||| || || | |||||||| || || ||| | Sbjct 26098 TGCTCACCGGC----TCGTGGCCTTCGCTGCTGTGG--GGCATCTTTTTCTCTGGTTCCT 26151 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 || |||||||||||| | |||||| | || || ||||| ||||| |||||| | Sbjct 26152 TTTGTGCCATCTTTTGGTTGAAGAAGAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATG 26211 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACT 125592 || || | ||||||||| | ||||||||||||||| || || | |||| Sbjct 26212 AGCAGATCAGCAGGGACGAGGGCATGCACTGTGACTTTGCCTGCCTCCTCTA---CAACA 26268 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCG 125652 || ||| || |||| || | | || | | || ||| || | | || |||| Sbjct 26269 ---TGA-TCCAGAA--CAGACCCTCCAACGACATGCCCACCAAGATCATTGCTGAAGCCG 26322 Query 125653 TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACT 125712 || ||| || | |||||| | | ||| ||||| || || || | || ||||||||| Sbjct 26323 TGGAGATTGAGAAGGAGTTTGTGAGCGAGTCCCTTCCAGTGAGGCTCATCGGCATGAACG 26382 Query 125713 GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTG 125772 | |||| |||||| ||||||| ||||||||||| || || || ||| | | | | Sbjct 26383 CCGAGCTCATGTGCCAGTACATTGAGTTTGTGGCGGACCGCCTGCTG---GTGGCCCTCG 26439 Query 125773 GCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC-TA 125828 || || ||||| |||||||| | ||| || ||||| | ||| ||| | || | | Sbjct 26440 GCTGCGAGAAGATCTACAACGCTACGAACCCGTTTGACTGGATG--GAGC-TCTCCCTTG 26496 Query 125829 GAGGGTAAGACCAACTTTTTCGAGA 125853 || || ||||||||||||||||||| Sbjct 26497 GAAGGCAAGACCAACTTTTTCGAGA 26521 >seq1059 Length=95284 Score = 163 bits (180), Expect = 4e-35 Identities = 336/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 ||||| ||| ||| | || ||||||||||| || ||||||||||||||||| || ||| Sbjct 56851 AAACGCAAAGGAGCTTTTGCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTT 56910 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCA 97007 | ||| || || ||| ||| || ||| || ||||| ||| | ||||| || Sbjct 56911 CTGGAGCTGAAGAAGAACCACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCG 56970 Query 97008 CTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATG 97067 |||||||| || || | ||||||||||| || | | | | ||| ||| | Sbjct 56971 CTCTGGGTTCCGGACCTATTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTT 57030 Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC 97127 || ||| || | ||||| || | ||| |||||| || ||||||||||| ||| Sbjct 57031 TGTCCCAACGAAGCTCCCGGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTAC 57090 Query 97128 ACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAG 97187 || ||||| || ||||||||| | ||| | || | || | ||| || ||| Sbjct 57091 ACTCGATACGAACAGGAGGGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTC 57150 Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247 |||||| || | || ||||||| || || || ||||| || |||||||| |||| Sbjct 57151 GCCATCCTGGAGAGCGAGATAGAGACCGGCACGCCCTACATGCTATACAAGGA-CTCGTG 57209 Query 97248 -AATCGCAACAGCAACCAACGCCACTTGGGCACCA-----TCAAGGGCTCCAATCTGTGC 97301 || ||||| |||||||| || | ||||||| ||||| ||| || ||| Sbjct 57210 CAACCGCAAGTCCAACCAACAGAACCTCGGCACCATTCGTTCAAG-----CAACCTTTGC 57264 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 ||||| || | |||||| |||| |||||| ||| || ||| || || || || Sbjct 57265 ACGGAGATCATGGAGTACACCTCCAAGGACGAAGTGGCTGTGTGCAACCTCGCTTCTCTC 57324 Query 97362 AATCTGCCCAAGTTTGT 97378 ||| ||||||||||| Sbjct 57325 GCTCTTCCCAAGTTTGT 57341 >seq1057 Length=235048 Score = 159 bits (176), Expect = 5e-34 Identities = 513/766 (67%), Gaps = 54/766 (7%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||| || |||||||||||||||| ||||| ||||| |||||||||||| || |||| Sbjct 120359 ATCACAACCTTTGGGAAATGTACAAGAAGGCCCAGGCTAGCTTTTGGACGGTGGAGGAGG 120300 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGG-GAGACTCGTTTGACTGAA--ACTGAGCGAG 125127 | || ||| ||||||| ||| ||| | || | ||| || | || || || Sbjct 120299 TAGACCTGGTGCAGGACCTTACCGACTGGAGCCACAAGCTTG--TGGAGGAC-GAACGCC 120243 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | ||||| |||| | |||||||| || || | ||| ||||| ||||| || || | Sbjct 120242 ACTTTATCAAGCACGTGTTGGCCTTTTTCGCTGCCTCGGATGGCATCGTGGTGGAGAACC 120183 Query 125188 T-GTTGACACGATTCTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGAT 125244 | | || | || ||| | ||| |||| | | | || |||| ||||| ||||| | Sbjct 120182 TTGCTGCC-CGCTTCA-TGAAGGAAGTTCAAC-TGCCGGAGGCACGTTGCTTCTACGGCT 120126 Query 125245 TCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACA 125304 | |||||| || |||||| | |||||||| |||||||| || || |||| ||| Sbjct 120125 TTCAAATCGCCATGGAGAACATCCACTCGGAGATGTACTCGCTGCTCATCGACACCTACG 120066 Query 125305 TTCGCGATCCGCAACGTAAACAC-ATGCTCTTTAACGCAATCGACACGGTGCCGTCTATA 125363 | || | || | ||| | | |||||||||||| || || |||||||| || Sbjct 120065 TCAAAGACGTGAAA-GAAAAGGCTAAGCTCTTTAACGCCATTGAGACGGTGCC---TAG- 120011 Query 125364 CGTAAA----AAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACG 125418 ||| || ||||| |||||| | | || ||||| || | | ||||| || | | Sbjct 120010 CGTGAAGAAGAAGGCCGAATGGGCGCTGCGTTGGATAGAAAAGCCACAAGCTTTTGCTCT 119951 Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCG 125477 || | | | || || ||||| || || ||||||||||| |||||| || |||| Sbjct 119950 GCGGCTCA----TCGCCTTTGCCGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTCTGCG 119895 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||| ||||| ||||| | || || ||||| ||||| | ||| |||||| | Sbjct 119894 -CCATCTTCTGGCTGAAGAAAAGAGGGCTGATGCCTGGACTCAGCTTCAGCAACGAGCTC 119836 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 ||| || || ||| | || ||||||||||| | | ||| |||| ||| | Sbjct 119835 ATAAGCAAGGATGAAGGCATGCATTGTGACTTTGCTTGTATGCTG-TTCG---GTATGT- 119781 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC------AACATTGTAACCGATGCC 125651 || | | | || || | || || ||||| | ||||| | || || Sbjct 119780 -----TAAGGGAAAAACC-GCCA-GAGGAGATCATCCGTCGGATCATTG---CGGAAGCT 119731 Query 125652 G-TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 | ||| | | || | |||||| | |||| || || || || | | || |||||||| Sbjct 119730 GTTGACG-TCGAGAAGGAGTTTGTTTCCGAGTCTCTTCCTGTTCGACTCATCGGCATGAA 119672 Query 125711 CTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 ||| |||| |||||| |||| |||||||||||||| ||||| || Sbjct 119671 -TGCGGAGCTCATGTGCCAGTATATAGAGTTTGTGGCGGATCGGCT 119627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044332499800