Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq942 89.7 3e-13 seq372 84.2 1e-11 >seq942 Length=135290 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || || ||||| || | | || | ||| ||| Sbjct 52847 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCC 52788 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| || || || |||||||||||||||| ||| |||||||| || || Sbjct 52787 AGCTGCTTGCCGGCGAAGATCAAACGTTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 52728 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| || | | || ||||| | | || || ||||| || || ||| Sbjct 52727 ATCTTCTGTTTCACGTTCTCGATGGTGTCCGAAGACTCCACTTCGAGAGTGATGGTCTTT 52668 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || |||||||||||||| Sbjct 52667 CCCGTGAGGGTCTTGACGAAAATTTGCAT 52639 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || ||||||||||||| | | || | ||| || Sbjct 53075 ACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTGCGACCGTCCTCA 53016 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| || || ||||| |||||||| | ||| |||||||| || || Sbjct 53015 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 52956 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || || | | || |||||| | | || ||||| || || || || Sbjct 52955 ATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAGGGTAATAGTCTTG 52896 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || ||||| || ||||| Sbjct 52895 CCGGTAAGAGTCTTGACGAAGATCTGCAT 52867 >seq372 Length=15075 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || || ||||| || | || | | ||| ||| Sbjct 1874 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCC 1933 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| || ||| || |||||||||||||| | || |||||||| || || Sbjct 1934 AGCTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 1993 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || || | | || ||||| || | || || ||||| || || ||| Sbjct 1994 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCCACCTCAAGAGTGATGGTCTTT 2053 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || |||||||||||||| Sbjct 2054 CCCGTGAGGGTCTTGACGAAAATTTGCAT 2082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771364411290