Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1427 136 6e-28 seq302 134 2e-27 seq631 129 9e-26 >seq1427 Length=84257 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | || || || || |||||||| || ||||||||||| || | Sbjct 13067 CGCCAAGCGTCACAGGAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 13009 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || | || || ||||||||| ||||||| || |||| || |||| Sbjct 13008 TCCGCCGTCTGGCCCGCAGGGGAGGCGTCAAGCGTATCTCTGGCATGATCTACGAGGAGA 12949 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||| | ||| ||| |||| || ||| || || |||| Sbjct 12948 CCCGCGGCGTGCTCAAGGTCTTTTTGGAGAACGTGATCCGCGACGCTGTCACTTACACCG 12889 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || |||||||| ||| ||||||| | ||||| || | || || || | Sbjct 12888 AGCACGCTCGCCGCAAGACTGTGACCGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGG 12829 Query 16671 GCCG 16674 |||| Sbjct 12828 GCCG 12825 >seq302 Length=12839 Score = 134 bits (148), Expect = 2e-27 Identities = 179/245 (73%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGA-ATCACCAAGCCAGCT 16489 ||| |||||||| | | | || || || || |||||||| || ||||||||||| || Sbjct 1413 CGCCAAGCGTCACAGGAAGGTC-CTGCGGGACAACATCCAGGGGCATCACCAAGCCCGCC 1471 Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| |||||||| || | || || ||||||||| ||||||| || |||| || ||| Sbjct 1472 ATCCGCCGTCTGGCCCGCAGGGGAGGCGTCAAGCGTATCTCTGGCATGATCTACGAGGAG 1531 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| |||| | ||| ||| |||| |||||| || || ||| Sbjct 1532 ACCCGCGGCGTGCTCAAGGTCTTTTTGGAGAACGTGATCCGCGATGCTGTCACTTACACC 1591 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||||| || |||||||| ||| ||||||| | ||||| || | || || || Sbjct 1592 GAGCACGCTCGCCGCAAGACTGTGACCGCCATGGACGTGGTCTACGCCCTCAAGCGCCAG 1651 Query 16670 GGCCG 16674 ||||| Sbjct 1652 GGCCG 1656 >seq631 Length=56639 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || |||||||| || ||||| |||||||| || | || Sbjct 42751 CTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTCTGGCCCGCAGGGGC 42810 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| ||||||| || |||| || |||| || | || | ||| |||| Sbjct 42811 GGCGTCAAGCGTATCTCTGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTCTTT 42870 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || ||| | ||| ||||||||||| || ||||| ||| Sbjct 42871 TTGGAGAACGTCATCCGCGACGCTGTGACCTACACCGAGCACGCCCGCCGGAAGACGGTC 42930 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| ||| | || || || ||||| | | || || ||||| Sbjct 42931 ACCGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGGCCGCACTCTCTACGGATTTGG 42989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073732537265