Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1059 172 7e-38 seq1057 156 5e-33 >seq1059 Length=95284 Score = 172 bits (190), Expect = 7e-38 Identities = 443/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| |||||||| |||| |||| || ||| ||| | ||||| | || ||| Sbjct 57080 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 57021 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 57020 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 56961 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 56960 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 56901 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 56900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 56841 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | |||||| || |||| ||| | || | | ||| || || | |||||| || Sbjct 56840 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 56781 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | ||||| || || ||| ||||| |||||| || | | || || Sbjct 56780 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 56721 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || || ||||| || |||||| | |||| ||||| ||||| ||||| Sbjct 56720 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 56661 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||||| || || |||| | || | ||| ||| ||| | ||| | || || || Sbjct 56660 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 56601 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || || || | || || | ||||| ||||| | | || | |||||||| ||| Sbjct 56600 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 56541 Query 63678 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 56540 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 56483 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 56482 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 56423 Query 63796 TAAAACCAAAATA 63808 |||| ||||| || Sbjct 56422 TAAAGCCAAAGTA 56410 >seq1057 Length=235048 Score = 156 bits (172), Expect = 5e-33 Identities = 308/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| || || || || |||| || || || | || || || |||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||||| ||||| || || | || || ||||| || |||| ||| || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAACCC 119908 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC 33472 || |||||||| ||||| ||||| |||||||| || || | | || || | | || Sbjct 119909 GAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGGC 119968 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | | | |||||| | ||||| ||||||||||| || || | ||||| ||| || | Sbjct 119969 TTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAA 120026 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| |||||||| | ||||| || ||||| || || || ||||| | || Sbjct 120027 TGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGCG 120086 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||| ||||| || ||||| || ||||| || ||||| |||||||| || | |||| Sbjct 120087 AGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCCT 120146 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | | | || ||||| | || || | || | || || ||| || || || Sbjct 120147 CCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCCG 120206 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||| || ||||| ||||| || || || ||||| Sbjct 120207 AGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 120240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934702121800