Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1059 172 7e-38 seq1285 165 1e-35 seq1057 145 1e-29 seq1539 129 7e-25 >seq1059 Length=95284 Score = 172 bits (190), Expect = 7e-38 Identities = 443/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| |||||||| |||| ||| || ||| ||| | ||||| | || ||| Sbjct 57080 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 57021 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 57020 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 56961 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 56960 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 56901 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 56900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 56841 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 56840 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 56781 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 || ||||| || || ||| ||||| |||||| || | | || || Sbjct 56780 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 56721 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 56720 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 56661 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 56660 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 56601 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 || || || | || || | ||||||||||| | | || | |||||||| ||| Sbjct 56600 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 56541 Query 63533 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 56540 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 56483 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 56482 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 56423 Query 63651 TAAAACCAAAATA 63663 |||| ||||| || Sbjct 56422 TAAAGCCAAAGTA 56410 >seq1285 Length=126460 Score = 165 bits (182), Expect = 1e-35 Identities = 367/551 (67%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| | |||||||| || || || ||||| || ||| Sbjct 51237 CAGGCAAAGTCGCAGTGCATGCCCTCGTCCCTGCTGATCTGCTCGTTACTGAAACAAAGT 51296 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| ||||| | ||| || | |||||| |||| ||| || ||||| || || Sbjct 51297 CCAGGCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAG 51356 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 32840 || || || || || |||||||| | || | | || | ||| || || | |||| Sbjct 51357 ATGCCCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCTATC 51416 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 ||||| ||||| || ||||||||| || ||||| ||||| || || || ||| Sbjct 51417 CACTTGATGGCCCACTCAGCCTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAG 51476 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 || || || || || || || || || || |||| ||| ||||| ||| Sbjct 51477 AGGCGGTCCTTCTCCAATGGGTCCTTCACGTAGGTGTCGATCAGAAGGGAGTACATCTCC 51536 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 || || || || |||||||| || ||||| ||||||||||| | |||||||| | || Sbjct 51537 GAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGGACTTGC 51596 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 || || | || || | || || || ||| || || ||||| ||| ||||| Sbjct 51597 ACCTCCTTCATGAAGCGGACGGCCAAGTTCTCAACAACGATGCCGTCCGAGGCGGCAAAG 51656 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || |||| || || | |||||||| ||||| | ||||| ||||| || || Sbjct 51657 AAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGTTTCTTCCAGTCGGTG 51716 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 | ||||| | | ||||| || || | ||||| || ||||| ||||| || ||| Sbjct 51717 AGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTAC 51776 Query 33201 ATATTCCAGAT 33211 || | |||||| Sbjct 51777 ATCTCCCAGAT 51787 >seq1057 Length=235048 Score = 145 bits (160), Expect = 1e-29 Identities = 308/455 (68%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || ||| || || || || || | || || || | || || | |||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 || ||||||| ||||| || || | || || ||||| || |||| |||| || || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAACC 119907 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCG 32828 || ||||| || ||||| ||||| |||||||| || || | | || || | | | Sbjct 119908 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGG 119967 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 || | | |||||| | ||||| ||||||||||| || || | ||||| ||||| Sbjct 119968 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 120025 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || |||||||| | ||||| || ||||| || || || || || | || Sbjct 120026 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 120085 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||| ||||| || ||||| || ||||| |||||||| ||||||||||| | ||| Sbjct 120086 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 120145 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | | || ||||| | || || | || | || || ||| || || || Sbjct 120146 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 120205 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||| || ||||| ||||| || || || ||||| Sbjct 120206 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 120240 >seq1539 Length=27205 Score = 129 bits (142), Expect = 7e-25 Identities = 327/494 (66%), Gaps = 4/494 (1%) Strand=Plus/Minus Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| ||||| | ||| || | |||||| |||| ||| || ||||| || Sbjct 26197 AGTCCAGGCATAAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAA 26138 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 32837 || || || | || || || ||||| | || | | || | ||| || || | | Sbjct 26137 AAGATGCC--CCACAGCAGCGAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCT 26080 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| ||||| || || |||||| || ||||| ||||| || || || Sbjct 26079 ATCCACTTGATGGCCCACTCAGCTTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTG 26020 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| || || || | || || || || || || |||| | | ||||| Sbjct 26019 AAGAGGCGGTCCTTCTCCA-AGGGTCCTTCACGTAGGTGTCGATCAGAGGGAG-TACATC 25962 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 ||||| || || || |||||||| || ||||| ||||||||||| | |||||||| | Sbjct 25961 TCCGAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGTACT 25902 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || | || || || || || |||||||| ||| ||| Sbjct 25901 TGCACCTCCTTCATGAAGCGGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCGGCA 25842 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 || || |||| || || | |||||||| ||||| | || || ||||| || Sbjct 25841 AAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGCTTCTTCCAGTCG 25782 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 ||| ||||| | | ||||| || || | ||||| || ||||| ||||| || Sbjct 25781 GTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTG 25722 Query 33198 TACATATTCCAGAT 33211 ||||| | |||||| Sbjct 25721 TACATCTCCCAGAT 25708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619287758000