Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq801 104 5e-17 seq579 104 5e-17 seq1543 102 2e-16 seq1287 102 2e-16 seq960 102 2e-16 seq797 102 2e-16 seq704 102 2e-16 seq378 102 2e-16 seq156 102 2e-16 seq15 102 2e-16 seq1506 100 6e-16 seq1419 96.9 7e-15 seq783 96.9 7e-15 seq476 96.9 7e-15 seq429 96.9 7e-15 seq206 96.9 7e-15 seq1285 93.3 9e-14 seq947 91.5 3e-13 seq933 91.5 3e-13 seq914 91.5 3e-13 >seq801 Length=482332 Score = 104 bits (114), Expect = 5e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 307661 AGAAAGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTT 307602 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 307601 CGAGCCCCAC 307592 >seq579 Length=398357 Score = 104 bits (114), Expect = 5e-17 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 14515 TAGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGA 14574 Query 142562 GCCCCAC 142568 ||||||| Sbjct 14575 GCCCCAC 14581 >seq1543 Length=67254 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 24440 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 24499 Query 142563 CCCCAC 142568 |||||| Sbjct 24500 CCCCAC 24505 >seq1287 Length=27539 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 10967 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 10908 Query 142563 CCCCAC 142568 |||||| Sbjct 10907 CCCCAC 10902 >seq960 Length=79466 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 50806 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 50747 Query 142563 CCCCAC 142568 |||||| Sbjct 50746 CCCCAC 50741 >seq797 Length=73911 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 47798 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 47857 Query 142563 CCCCAC 142568 |||||| Sbjct 47858 CCCCAC 47863 >seq704 Length=164225 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 129447 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 129388 Query 142563 CCCCAC 142568 |||||| Sbjct 129387 CCCCAC 129382 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 58396 GCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 58455 Query 142564 CCCAC 142568 ||||| Sbjct 58456 CCCAC 58460 >seq378 Length=15985 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4919 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4978 Query 142563 CCCCAC 142568 |||||| Sbjct 4979 CCCCAC 4984 >seq156 Length=26647 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4494 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4435 Query 142563 CCCCAC 142568 |||||| Sbjct 4434 CCCCAC 4429 >seq15 Length=31504 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 11119 AGCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 11060 Query 142563 CCCCAC 142568 |||||| Sbjct 11059 CCCCAC 11054 >seq1506 Length=73002 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 32678 GCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 32619 Query 142564 CCCAC 142568 ||||| Sbjct 32618 CCCAC 32614 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 66803 GCCGGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 66744 Query 142564 CCCAC 142568 ||||| Sbjct 66743 CCCAC 66739 >seq1419 Length=129607 Score = 96.9 bits (106), Expect = 7e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 122027 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 121970 >seq783 Length=132342 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 59446 AGCCGAGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 59387 Query 142563 CCCCAC 142568 |||||| Sbjct 59386 CCCCAC 59381 >seq476 Length=8039 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 7146 AGCCGAGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 7205 Query 142563 CCCCAC 142568 |||||| Sbjct 7206 CCCCAC 7211 >seq429 Length=8749 Score = 96.9 bits (106), Expect = 7e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 6557 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 6500 >seq206 Length=21391 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 2429 AGCCGAGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 2370 Query 142563 CCCCAC 142568 |||||| Sbjct 2369 CCCCAC 2364 >seq1285 Length=126460 Score = 93.3 bits (102), Expect = 9e-14 Identities = 268/409 (66%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| |||| ||||| |||||||| |||| || ||||| || Sbjct 50969 TCGAAAAAGTTGGTCTTGCCTTCCAAGGAGATGAGCTCCATCCAGTCAAACGGGTTCGTA 51028 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| ||| || || || | | |||||| ||||||||||| | Sbjct 51029 GCGTTGTAGATCTTCTCGCAGCCGAGGGCCACCAGCAGGCGGTCCGCCACAAACTCAATG 51088 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT----CATACGACAAGGAATTGCCTCACA 251738 ||||| | ||| || || | ||||||||| || | || |||| | | |||||| Sbjct 51089 TACTGGCACATGAGCTCGGCGTTCATGCCGATGAGCCTCACTGGAAGGGACTCGCTCACA 51148 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC-CAG-- 251795 || |||||||| | | || ||||| | | ||| ||| || || ||| Sbjct 51149 ----AACTCCTTTTCAATCTCCACAGCCTCAGCAATAAT---CTT--GGTGGGCACAGTC 51199 Query 251796 ---AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACC 251852 || | |||||| | | | ||| ||||| | |||| | ||||| || Sbjct 51200 GTTGGAGGGTCTGTTCTGGATCATGTTGTAGAGGAGGCAGGCAAAGTCGCAGTGCATGCC 51259 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| | ||||| |||||| | || || |||||||| | || | ||| | Sbjct 51260 CTCGTCCCTGCTGATCTGCTCGTTACTGAAACAAAGTCCAGGCATGAGGCCTCTCTTCTT 51319 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 | ||| ||||| || |||||||| |||||||| | | ||||| ||| Sbjct 51320 CAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAGATGCCCTCCACA 51368 >seq947 Length=286248 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 28259 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 28316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 28941 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 28884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 33271 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 33328 >seq933 Length=369102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 263358 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 263301 >seq914 Length=132171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 124161 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 124104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 128575 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 128632 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 129053 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 128996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815663499805