Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1285 242 6e-59 seq1539 185 1e-41 seq1059 140 5e-28 >seq1285 Length=126460 Score = 242 bits (268), Expect = 6e-59 Identities = 560/837 (67%), Gaps = 24/837 (3%) Strand=Plus/Plus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 |||||||||||||||||||||| |||| ||| || ||||| | | || |||||| Sbjct 50967 TCTCGAAAAAGTTGGTCTTGCCTTCCAAGGAGATGAGCTCCATCCAGTCAAACGGGTTCG 51026 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 | ||| ||| |||| | ||||| ||| |||||| | ||| |||||||| || | Sbjct 51027 TAGCGTTGTAGATCTTCTCGCAGCCGAGGGCCACCAGCAGGCGGTCCGCCACAAACTCAA 51086 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| |||| ||| || || | ||||| || || || | || || Sbjct 51087 TGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGCCTCACTGGAAGGGACTCGCTCA 51146 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCC 159889 ||||||||| |||||||| || || || | | ||||| | | ||| |||| Sbjct 51147 CAAACTCCTTTTCAATCTCCACAGCCTCAGCAATAATCTTGGTGGGCACAGTCGTTGGAG 51206 Query 159890 GGCTTGCCC---AAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 || || | | |||| || | |||||||| |||||||||||||||| ||| Sbjct 51207 GGTCTGTTCTGGATCATGTTGT------AGAGGAGGCAGGCAAAGTCGCAGTGCATGCCC 51260 Query 159947 TCGTCCCGAGAGATGAACTCGTT--GGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| ||| |||||| || | | || || ||||||| || | | | Sbjct 51261 TCGTCCCTGCTGATCTGCTCGTTACTGAAACAA--AGTCCAGGCATGAGGCCTCTCTTCT 51318 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | | |||||| ||||| ||| | ||| |||||||| |||||||| || ||||| | Sbjct 51319 TCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAGATGCCCTCCACAGCGGCAAAGG 51378 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 ||||||||| | | ||| || ||| || || | ||||| | ||||||| |||| Sbjct 51379 CCACGAGCCGGTGAGCAA---AGCCGTCGGGGTTTTCTATCCACTTGATGGCCCACTCAG 51435 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 |||||||| || | |||| | ||||| |||||| || | | ||||| |||| Sbjct 51436 CCTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAGAGGCGGTCCTTCTCCAATG 51495 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||| | || | ||||| |||||||| || | ||| | ||| || |||| Sbjct 51496 GGTCCTTCACGTAGGTGTCGATCAGAAGGGAGTACATCTCCGAGTGGATATTCTCAATGG 51555 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTT 160304 | ||||||||| |||||| | ||||| | |||||||||| |||| | Sbjct 51556 CGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGGACTTGCACCTCCTTCATGAAGC--G 51613 Query 160305 GAC--CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 ||| ||| || || ||| | ||||| | ||| |||||||| |||| ||||| | Sbjct 51614 GACGGCCAAGTTCTCAACAACGATGCCGTCCGAGGCGGCAAAGAAGGCCAGGACGTGGGT 51673 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422 ||| |||| | |||||| | |||| |||| ||||| || | |||||||| | Sbjct 51674 GATAAAATAGCGCTCGTCCTCAGAGAGTTTCTT---CCAGTCGGTGAGATCTTGGGCAAG 51730 Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 51731 GTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACATCTCCCAGAT 51787 >seq1539 Length=27205 Score = 185 bits (204), Expect = 1e-41 Identities = 554/838 (66%), Gaps = 33/838 (4%) Strand=Plus/Minus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 |||||||||||||||||||||| |||| || | | | |||| | | || |||||| Sbjct 26521 TCTCGAAAAAGTTGGTCTTGCCTTCCAAGGG-AGAGCT-CCATCCAGTCAAACGGGTTCG 26464 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 | ||| ||| |||| | ||||| ||| |||||| | ||| |||||||| || | Sbjct 26463 TAGCGTTGTAGATCTTCTCGCAGCCGAGGGCCACCAGCAGGCGGTCCGCCACAAACTCAA 26404 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| |||| ||| || || | ||||| || || || | || || Sbjct 26403 TGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGCCTCACTGGAAGGGACTCGCTCA 26344 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC-TGCGAGACACGTTCGTACCCC 159889 |||||||||||||||||| || ||||| | | ||| || | || | |||| Sbjct 26343 CAAACTCCTTCTCAATCTCCACGGCTTCAGCAATGATCTTGGTGGGCATG-TCGTTGGAG 26285 Query 159890 GGCTTGCCC---AAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 || || | | |||| || | |||||||| |||||||| ||||||| ||| Sbjct 26284 GGTCTGTTCTGGATCATGTTGT------AGAGGAGGCAGGCAAAGTCACAGTGCATGCCC 26231 Query 159947 TCGTCCCGAGAGATGAACTCGTT--GGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| ||| ||| || || | | || || ||||| | || | | | Sbjct 26230 TCGTCCCTGCTGATCTGCTCATTACTGAAACAA--AGTCCAGGCATAAGGCCTCTCTTCT 26173 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | | |||||| ||||| ||| | ||| |||||||| || |||| || || || | Sbjct 26172 TCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAGATGCC--CCACAGCAGCGAAGG 26115 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 ||||||||| | | ||| || ||| || || | ||||| | ||||||| |||| Sbjct 26114 CCACGAGCCGGTGAGCAA---AGCCGTCGGGGTTTTCTATCCACTTGATGGCCCACTCAG 26058 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 | |||||| || | |||| | ||||| |||||| || | | ||||| |||| Sbjct 26057 CTTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAGAGGCGGTCCTTCTCC-AAG 25999 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||| | || | ||||| |||||||| || | ||| | ||| || |||| Sbjct 25998 GGTCCTTCACGTAGGTGTCGATCAG-AGGGAGTACATCTCCGAGTGGATATTCTCAATGG 25940 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTT 160303 | ||||||||| |||||| | |||| | | ||| |||||||||| |||| | Sbjct 25939 CGATCTGAAAGCCGTAGAAGCAGCGAGCCT-CGGGTACTTGCACCTCCTTCATGAAGC-- 25883 Query 160304 TGAC--CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 ||| ||| || | ||| | ||||| | ||| |||||||| |||| ||||| | Sbjct 25882 GGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCGGCAAAGAAGGCCAGGACGTGGG 25823 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 ||| |||| | |||||| | ||| ||| | ||||| || | |||||||| | Sbjct 25822 TGATAAAATAGCGCTCGTCCTCAGAGAG---CTTCTTCCAGTCGGTGAGATCTTGGGCAA 25766 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 25765 GGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACATCTCCCAGAT 25708 >seq1059 Length=95284 Score = 140 bits (154), Expect = 5e-28 Identities = 391/595 (66%), Gaps = 10/595 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || || ||||| || ||||| | ||||| || | || || |||||||| || || Sbjct 58256 TCTACAGTAAACTGGATAGCGTTGGCAGCAGGTCTCGTCCTGAGGTAGTACATTCCCGTT 58197 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || | |||||||| ||| |||| | |||||| || | || ||| | | |||| | Sbjct 58196 TTCAAGCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAGCTTGGCAAAGGAGGGGGCC 58137 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 ||||| | ||| | |||||| || ||||| || | | | ||||| || ||||| Sbjct 58136 TTGATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAACGCCCCTCGATCCGCCGCCATG 58077 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTG 204081 | ||| | ||| || || | ||||||||| |||||| ||| | ||| | |||||| Sbjct 58076 TCGATCAAGGTACGTTGGGACACCTCCCACACGGTCTTGTACAGCTTCT-TAATGTGTTC 58018 Query 204082 AGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || | | | | || ||| | |||||||||| |||| |||| || || || Sbjct 58017 CGGGATG-CAGGCAAGGTGTTGAACAGAGCCGTTGTGAGCCACCAGTTGGTTCTTCAGCT 57959 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | | | ||||| ||| || | |||| || ||| || |||| ||||| || | Sbjct 57958 CGGCGCTCCACAGGCCTAAGTTTCTCAGGTCTTGCATCAAGTGGCTGTTGACAATGGTGA 57899 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 ||||||| | || | | || | | | | |||| ||| | || || || ||| | Sbjct 57898 AGTCTCCAGCCAAGATGCGGCGAGAGTAGATGTTGGAAGTGTAGGGCTCAAAGCACTCAT 57839 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 ||||||||| ||||| | |||| ||| || ||||||||||||| | || | ||| | Sbjct 57838 TGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGCATGGGAGCCACCAACAAGCTGTTCC 57779 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC------GTGCATCGCAC 204374 || |||| | | || | | ||||||| || |||||| ||| || || Sbjct 57778 TCAGGCCGTGCTCCTTGATCTTCTGCTTCAGGCCGGCCCAGTCCCAGTTCTGCTCCGAAC 57719 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || ||| ||||| | ||| ||||| |||| ||||| || | || ||||| Sbjct 57718 GAGGCACCACTCCCCAGAGGTCAAACTGCAAGAGGCCTTTGCTTGCAGGACTGCC 57664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139247198800